Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22970 326 / 3e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT4G14620 298 / 8e-99 Protein of unknown function (DUF506) (.1) AT2G38820 257 / 4e-83 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT3G54550 182 / 1e-54 Protein of unknown function (DUF506) (.1) AT2G39650 124 / 3e-32 Protein of unknown function (DUF506) (.1) AT3G07350 119 / 1e-30 Protein of unknown function (DUF506) (.1) AT4G32480 118 / 4e-30 Protein of unknown function (DUF506) (.1) AT3G25240 113 / 2e-28 Protein of unknown function (DUF506) (.1) AT2G20670 109 / 4e-27 Protein of unknown function (DUF506) (.1) AT1G12030 109 / 5e-27 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039397 [exp] 604 / 0 AT3G22970 362 / 2e-122 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10014718 [exp] 306 / 1e-101 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10003087 [exp] 293 / 3e-96 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10024840 [exp] 283 / 3e-92 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10018754 [exp] 277 / 8e-90 AT2G38820 319 / 6e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10023412 [exp] 140 / 4e-38 AT2G39650 273 / 2e-91 Protein of unknown function (DUF506) (.1) Lus10000956 [exp] 135 / 3e-37 AT2G39650 266 / 1e-89 Protein of unknown function (DUF506) (.1) Lus10003174 [exp] 133 / 1e-35 AT3G07350 253 / 2e-83 Protein of unknown function (DUF506) (.1) Lus10002695 [exp] 132 / 3e-35 AT2G39650 313 / 4e-107 Protein of unknown function (DUF506) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G159800 [exp] 436 / 2e-152 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.010G080600 [exp] 426 / 2e-148 AT3G22970 371 / 3e-127 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G216900 [exp] 329 / 3e-110 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.002G046300 [exp] 323 / 4e-108 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G058200 [exp] 133 / 3e-36 AT2G38820 154 / 3e-45 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G188100 [exp] 132 / 3e-36 AT1G77160 169 / 8e-52 Protein of unknown function (DUF506) (.1) Potri.002G071500 [exp] 129 / 8e-35 AT1G77160 155 / 2e-46 Protein of unknown function (DUF506) (.1) Potri.007G109700 [exp] 129 / 9e-35 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G056100 [exp] 127 / 3e-33 AT2G39650 293 / 3e-99 Protein of unknown function (DUF506) (.1) Potri.010G203700 [exp] 125 / 6e-33 AT2G39650 287 / 9e-97 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10006634 pacid=23145296 polypeptide=Lus10006634 locus=Lus10006634.g ID=Lus10006634.BGIv1.0 annot-version=v1.0 ATGCCTCCTATGAAGATCCAGCCAATCGATGTCGATTCTCATATGCTGCCGATTCCGGCCAGAGCCGAGCTGGCAAAACCTGTGTTGAAATCGCGGCTGA AGAGGCTCTTTGACCGTCAGCTGCCGAGTGTGTTGAGGATTTCGTCTGTTGATAAGCCGATTCAAGGCGATGCGCAGCAATGCGGGGCGAAAGATGCCGT CGGAGTCGGAGTTGCAACTGGAGGAGCCGACTTCGAGCCGAGCTCGGTGATTTTGGCCAAAATGGTGCAGAATTACATAGAGGAGACAAACGAGAAGCCT TTCCGCGGTCGCAATCGTTGCAATTGCTTCAACGGGAACACCAATGACAGCTCCGATGATGAATTTGATGTGTTTGATGGCGAGTCGGTTATCAGCAATG GACCTCCAAGGGACGCCAACGATATTCTCAAGAGTCTTATTATGTGCGCTAGCATAACCGAGAGGAATCTCCTTGCAGATGCAGCGGCGATTGTCGAAAA GAACAAGAATCATAAACAGAAAGACGAATTGAGGAAGATCGTTGCCGACGGGTTATCGGCGGCAGGCTATGATAGCTCCATCTGCAAGTCCAAATGGGAG AAATCCTCTTCTTATCCAGCCGGTGAATACGAGTACGTAGATGTGACAGTTGACGGCGAGAGACTGTTGATTGACATTGACTTCAGATCGGAGTTCGAGA TAGCTCGATCGACTGGTGCTTACAAAGCCGTACTTCAATCTCTGCCGTTCTTGTTCGTTGGAAAACCAGAGCGGCTAGGCCAGATCGTGTCGATCGTATC GGAGGCGGCGAAGCAGAGCCTGAAGAAGAAAAGGATGCACTTCCCTCCATGGAGGAAAGCCGAGTACATCCGAGCCAAGTGGCTATCGCCGTTCACCAGA CTAGCCGACACGGCTCCCGACTGCAAAGCCGAAGAGCACCAGAACGGAGGAGAGCTGCCGGAAGGAACGGCAAGAGACGAATGTTCTGGAGAGCTTGAGC CGATTTTTGGTGAGAAAGCCACGCTGTCGTCGGAGAATTCGTCGTCGTCAACGACACCTTCTCAAGCGACGAGCTCCGATGGGCCAGAGACAACGAAGGT GGAGACGGCGGTAGAATGGAAACCGCCGGCAGNNNNNNNNNAGAGACAAAACACCCCGCCGGAAATGAAGCCGAAGAGTGTAGAGAGGAGAACGAAGATG GTGACCGGATTAGCTTCTCTTCTGAAAGAGAAACCATGA
AA sequence Show only first row Show all	>Lus10006634 pacid=23145296 polypeptide=Lus10006634 locus=Lus10006634.g ID=Lus10006634.BGIv1.0 annot-version=v1.0 MPPMKIQPIDVDSHMLPIPARAELAKPVLKSRLKRLFDRQLPSVLRISSVDKPIQGDAQQCGAKDAVGVGVATGGADFEPSSVILAKMVQNYIEETNEKP FRGRNRCNCFNGNTNDSSDDEFDVFDGESVISNGPPRDANDILKSLIMCASITERNLLADAAAIVEKNKNHKQKDELRKIVADGLSAAGYDSSICKSKWE KSSSYPAGEYEYVDVTVDGERLLIDIDFRSEFEIARSTGAYKAVLQSLPFLFVGKPERLGQIVSIVSEAAKQSLKKKRMHFPPWRKAEYIRAKWLSPFTR LADTAPDCKAEEHQNGGELPEGTARDECSGELEPIFGEKATLSSENSSSSTTPSQATSSDGPETTKVETAVEWKPPAXXXXRQNTPPEMKPKSVERRTKM VTGLASLLKEKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22970			Protein of unknown function (D...		Lus10006634 [exp]	0	1
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Lus10034402 [exp]	9.4	0.7209
AT4G24380			unknown protein		Lus10008722 [exp]	20.2	0.7364
AT3G14470			NB-ARC domain-containing disea...		Lus10039540 [exp]	26.0	0.7273
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10042292 [exp]	32.0	0.6966
AT5G60050			BTB/POZ domain-containing prot...		Lus10023336 [exp]	39.5	0.6954
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10036288 [exp]	42.7	0.7239
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10019093 [exp]	48.0	0.7072
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	52.0	0.7054
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10030857 [exp]	53.0	0.6675
AT5G64170			dentin sialophosphoprotein-rel...		Lus10015846 [exp]	54.4	0.6717

Compare expression of checked genes

Lus10006634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.