Plant FIBer expression Database

Lus10006635 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G22990 587 / 0 LFR LEAF AND FLOWER RELATED, ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039398
[exp]
819 / 0 AT3G22990 605 / 0.0 LEAF AND FLOWER RELATED, ARM repeat superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G159900
[exp]
684 / 0 AT3G22990 577 / 0.0 LEAF AND FLOWER RELATED, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10006635 pacid=23145304 polypeptide=Lus10006635 locus=Lus10006635.g ID=Lus10006635.BGIv1.0 annot-version=v1.0
ATGCAGAAACGAGATCAGAACAAGTTTGGTACCGCAGCCGGCGGCACAGGGGCACCGCCGCCGAAGAGAGGCCGCCCTTTCGGTAGCACGAACAGCAATT
CTTCTGCCGGCGGTGGCGGGGACGCAGCAGCTCCGTCGACTCTGCTCGGCCCTTCTCTCCAGGTTCACAACACATTTGCCGATCAAAATAATAAGAGGAT
AGTTCTGGCACTCCAGAGTGGACTCAAGAGCGAGCTGAGATGGGCTTTGAACACCCTCACTCTTCTCTCTTTCAAAGAGAAGGAAGATCTGCGCAAAGAT
TCCTTAGCTAAAATCCCAGGCTTGCTCGACGCTCTCCTCCAAGTTATAGATGACTGGCGTGATATAGCGCTTCCCACAGAACTAAGCAGGAGTGCTAGAG
CCCGTACGTTGGGAGCAAATTCTCTTGTGACGGGATTTGGGCATGAATACAAGACGTTAGGATCAGTGACTGCTCCTTTAAATCCAGTGTCAGGATCTAG
TACAAATGAGGCATCAGTACTGAAGAATGCTGCCAAAGTTCGTTCTTCGGAGTGGTGGTCAGATGAGGATGGTATTTTCAATTTGGATGATGAAGGAAGG
GCTGAAAGGCAGCAGTGTGCTGTGGCTGCTTCAAATATCATACGCAATTTTTCATTCATGCCAGAAAATGAAGTCGTTATGGCCCAACTCCGGCATTGTG
TGGAAACGGTATTCCAGTGTATGGAAGATCACAACTCTGAGGACGAGGAACTGGTAACAAATGCCCTTGAAACAGTTGTAAATTTGGCTCCATTGCTCGA
TCTTCGAATTCTAAGCTCACAAAAGCCTAGTTTCATCAATATGACAGAAAAAAGGGCTGTTCAAGCTATTATGGCCATACTGGGGTCTTCAGTGAAAGCC
TGGCACTGTGCTGCTGCTGAATTGATAGGCCGCTTATTTATAAATCCTGACAACGAACCTTTCCTTCTGCCTTGCCTTCCGCAGATACACAAGCGTCTAG
TAGATCTTTTGACCGTACAAGCAGCTGATGCCCAAGCAGCTGCTGTCGGTGCTCTCTATAACTTAGCCGAAGTTAACATGGACTGCAGACTGAAGCTCGC
CAGTGAACGATGGGCAGTGGACCGGCTACTGAAAGTGATCAAAATGCCTCATCCAGTGCCAGAGATATGCAGGAAAGCAGCGATGATACTGGAGAGCCTA
GTCTCAGAGCCACAGAACAGGCCTTTGCTGCTGATCTACGAGAATTCGTTTGCGGAAATTCTATTCTCGGAGAGCAAGTATTCAGATACGTTTGCCAGGA
TCTTGTATGAACTAACGGCCAGGCCAAACAGCAAGTTCACAGCAGCTCGAGGGATTTGGGGGATGTATTAG
AA sequence
>Lus10006635 pacid=23145304 polypeptide=Lus10006635 locus=Lus10006635.g ID=Lus10006635.BGIv1.0 annot-version=v1.0
MQKRDQNKFGTAAGGTGAPPPKRGRPFGSTNSNSSAGGGGDAAAPSTLLGPSLQVHNTFADQNNKRIVLALQSGLKSELRWALNTLTLLSFKEKEDLRKD
SLAKIPGLLDALLQVIDDWRDIALPTELSRSARARTLGANSLVTGFGHEYKTLGSVTAPLNPVSGSSTNEASVLKNAAKVRSSEWWSDEDGIFNLDDEGR
AERQQCAVAASNIIRNFSFMPENEVVMAQLRHCVETVFQCMEDHNSEDEELVTNALETVVNLAPLLDLRILSSQKPSFINMTEKRAVQAIMAILGSSVKA
WHCAAAELIGRLFINPDNEPFLLPCLPQIHKRLVDLLTVQAADAQAAAVGALYNLAEVNMDCRLKLASERWAVDRLLKVIKMPHPVPEICRKAAMILESL
VSEPQNRPLLLIYENSFAEILFSESKYSDTFARILYELTARPNSKFTAARGIWGMY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G22990 LFR LEAF AND FLOWER RELATED, ARM r... Lus10006635
[exp]
0 1
AT1G64260 MuDR family transposase (.1) Lus10038037
[exp]
1.7 0.8952
AT1G72570 AP2_ERF Integrase-type DNA-binding sup... Lus10037670
[exp]
2.8 0.8803
AT1G72210 bHLH bHLH096 basic helix-loop-helix (bHLH) ... Lus10001271
[exp]
4.2 0.8795
AT3G20550 FHA DDL DAWDLE, SMAD/FHA domain-contai... Lus10019235
[exp]
5.9 0.8907
AT1G71800 CSTF64 cleavage stimulating factor 64... Lus10009670
[exp]
6.0 0.9003
AT1G14650 SWAP (Suppressor-of-White-APri... Lus10025705
[exp]
6.2 0.8969
AT5G66960 Prolyl oligopeptidase family p... Lus10017568
[exp]
9.9 0.8719
AT3G58690 Protein kinase superfamily pro... Lus10033606
[exp]
10.2 0.8514
AT2G46310 AP2_ERF CRF5 cytokinin response factor 5 (.... Lus10003037
[exp]
10.8 0.8266
AT1G73840 ESP1 ENHANCED SILENCING PHENOTYPE 1... Lus10009030
[exp]
12.0 0.8907

Lus10006635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.