Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04220 612 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT2G26640 609 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT5G43760 601 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT1G01120 566 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT2G16280 545 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G19440 540 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT4G34510 538 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G68530 513 / 1e-179 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT2G46720 511 / 2e-179 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT1G25450 508 / 1e-177 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039399 [exp] 761 / 0 AT1G04220 689 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10043300 [exp] 602 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10019446 [exp] 602 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10006637 [exp] 601 / 0 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10041177 [exp] 599 / 0 AT1G04220 782 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10002691 [exp] 576 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10030209 [exp] 576 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10012611 [exp] 573 / 0 AT1G01120 863 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10010108 [exp] 565 / 0 AT1G01120 868 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G080200 [exp] 660 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080400 [exp] 659 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 657 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079700 [exp] 656 / 0 AT2G26640 756 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 627 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 617 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.018G032200 [exp] 612 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079300 [exp] 612 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 608 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.002G178000 [exp] 579 / 0 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10006636 pacid=23145336 polypeptide=Lus10006636 locus=Lus10006636.g ID=Lus10006636.BGIv1.0 annot-version=v1.0 ATGTCTTCTGAAACTGCAAAAACGGGTAAGTTAATTTTCCCGCTAACATCGTCGGTTAAACTCCTCAAACAAGGCTTTATCTACCTCATCGTCATCCTTC TCTCCGTCGTCGTTTTAACACAGCCCGCCGCGTCCAACCTCCTACACCTCTGCGCCAAAAACTACGCCATGATCCTGACCCTCATCAGTGCCGTCGCCTT AGCCGTCCTCGTCATCCAGTACTCACGGCGGAGAATAATCTACCTACTGGACTTCGCATGCTACAAGCCCAGCCCAGCCAACCTGTCCTCGAAGGAGGAT TTCATGAGGGTGTCATTGTCTACGGGAGAGTTCACGGAAGAAAGCCTGGAGTTCCAGCGCAAGATCCTCGAGAAATCTGGGTTCGGGCAGATGACCTATT TGCCCAGGCGGCTTCTCGCATGTAAAACGCCGCCTGATAACTCCTTGGAGTCAGCGAGGGACGAGACCCAGACGGCCATTTTCGGTGCGATCGATGATCT GTTGGAGAAGAGCGGGGTGAGTGTTGGGGAGATCGGAGTGTTGGTGGTGAACAGTAGCTTGTTCAATCCGACGCCGTCTCTTTCGGCCATGATTGTGAAT CGGTACAAGCTGAGAGAGGACGTGTTGAGTTATAACCTTGGCGGGATGGGTTGCAGCGCTGGCTTGATCTCCCTTGACTTGGCTCGCGACATTTTGCAGG TTCATCCCCACACATACGCCCTGATCGTCAGCACAGAGAACATAACCAGCAATTGGTACTTTGGCAATGTTCGCCAGATGCTCCTATCAAACTGCCTCTT CCGGGTAGGAGCCGCCGCCGTTCTCCTCACAAACCGCCACTGCGACCGCCACCGCTCCAAGTACCAGCTCCTCCACACCGTCCGGACCCACAAGGGAGCC GGCGACAAATCCTACGCCTGCGTGTTTCAGCAAGAGGACGACCGGAATATCGTTGGAGCTTACCTCTCAAAGGACCTCATGGCCGTCGCCGGCGAAGCCC TGAAAACCAACATCACGACCCTGGGCCCACTCGTTCTCCCAATTTCAGAGCAGATCCTGTTCCTAGCAACACTGATCGCTAAGAAAGTGCTGCAATTGAA AGTGAAGCCTTACATTCCGGATTTTAAGCTAGCATTCGAGCACTTCTGCATCCACGCCGGAGGCAGAGGAGTGTTGGACGAGGTGGAAAAGAGATTGAAA CTGACAGAGTGGCACATGGAACCTTCCAGAATGACGCTGTACAGGTTTGGGAACACGTCGAGCAGTTCGCTCTGGTACGAGTTGGCATATAGTGAGGCGA AAGCAAGGGTGAAGAAAGGGGACCGGGTTTGGCAGATTGGGTTCGGGTCGGGTTTCAAGTGCAACAGTGTTGTGTGGCGTGCTGTGAAGAGCATTGAATC TGGGAAGAAGAAGAACGTTTGGTGGGATGAGATTGATGGGTTTCCTGTTCAAGTTCCGAAAGTGGCGCCAATCGTTTACTAA
AA sequence Show only first row Show all	>Lus10006636 pacid=23145336 polypeptide=Lus10006636 locus=Lus10006636.g ID=Lus10006636.BGIv1.0 annot-version=v1.0 MSSETAKTGKLIFPLTSSVKLLKQGFIYLIVILLSVVVLTQPAASNLLHLCAKNYAMILTLISAVALAVLVIQYSRRRIIYLLDFACYKPSPANLSSKED FMRVSLSTGEFTEESLEFQRKILEKSGFGQMTYLPRRLLACKTPPDNSLESARDETQTAIFGAIDDLLEKSGVSVGEIGVLVVNSSLFNPTPSLSAMIVN RYKLREDVLSYNLGGMGCSAGLISLDLARDILQVHPHTYALIVSTENITSNWYFGNVRQMLLSNCLFRVGAAAVLLTNRHCDRHRSKYQLLHTVRTHKGA GDKSYACVFQQEDDRNIVGAYLSKDLMAVAGEALKTNITTLGPLVLPISEQILFLATLIAKKVLQLKVKPYIPDFKLAFEHFCIHAGGRGVLDEVEKRLK LTEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKARVKKGDRVWQIGFGSGFKCNSVVWRAVKSIESGKKKNVWWDEIDGFPVQVPKVAPIVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006636 [exp]	0	1
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	16.0	0.8219
AT3G26590			MATE efflux family protein (.1...		Lus10006206 [exp]	20.1	0.7712
AT5G07130		LAC13	laccase 13 (.1)		Lus10042251 [exp]	20.5	0.8159
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10034020 [exp]	24.7	0.8129
AT1G67550		URE	urease (.1)		Lus10036993 [exp]	24.8	0.8112
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	30.3	0.8119
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10000318 [exp]	33.8	0.8092
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10038392 [exp]	36.7	0.8077
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10030924 [exp]	43.6	0.7289
AT2G18570			UDP-Glycosyltransferase superf...		Lus10024037 [exp]	48.3	0.7523

Compare expression of checked genes

Lus10006636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.