Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039402 [exp] 310 / 2e-98 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10005988 [exp] 71 / 8e-14 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 71 / 1e-13 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10035007 [exp] 41 / 0.0002 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G079200 [exp] 277 / 6e-87 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.014G102000 [exp] 97 / 6e-23 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.002G175800 [exp] 86 / 5e-19 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 76 / 1e-15 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006638 pacid=23145333 polypeptide=Lus10006638 locus=Lus10006638.g ID=Lus10006638.BGIv1.0 annot-version=v1.0 ATGGATTTCATACCCATAGGGACCGTGTTGGCTCTGCTAACAAGCCAGGTCATCAAAACAGCACAAGCTGCGAAAGACATTCTAATCGAAAAGGATAGCT TCAGATTCCTGTCACAGCACCTCTTTGACATTGAGCCTGTGTTAAAGGAGCTGCAGCTTCAAAAACTCAACGATTCTCAACCTTCCAGATGCAGGCACGT TGTAAATGAGGTCGAACAAGTCACTAGGGGCATTGGCAAGTGTTTAGCTGCAATGTCCCTTGCTAATACAGAAGTCCTGGCCAGGATATCTGATCAAGTC CACAGGCTTCAGCATGAGATGCAAAGGGTTAAACTTGAAGCTTCTCATTCTCAGCTTCAAATCCTTGACAAGCTAAACCAGGGCCTTAGAGATCAGAAGC TCGACCTTGGCTTCGCCAACGATATGCTTGAAGAAATAGCAAGTGCAGTTGGGGTTCCTGTGGAGCCTTTACAGATAAGTAGAGAGTTGGCAAGCTTTAA AGTGGAGAAAGAGGAAGCTGCTAGCCGGAAAGAGAGGGCCGAGGAACTCTTCTTGGAGCAAGTCATTGAGCTGCTTTCCAGGGCTGATGCTGCTAGGGAC TATCAAGTCGTGGAGAGATGCAATGTACCAAGGTGCACGGTGCATGGTGGAAGTGCAATGTACCAAAGTGTACGATGCATGGTGGAAATGCATCATACCA ATATGCACCGTAGATGA
AA sequence Show only first row Show all	>Lus10006638 pacid=23145333 polypeptide=Lus10006638 locus=Lus10006638.g ID=Lus10006638.BGIv1.0 annot-version=v1.0 MDFIPIGTVLALLTSQVIKTAQAAKDILIEKDSFRFLSQHLFDIEPVLKELQLQKLNDSQPSRCRHVVNEVEQVTRGIGKCLAAMSLANTEVLARISDQV HRLQHEMQRVKLEASHSQLQILDKLNQGLRDQKLDLGFANDMLEEIASAVGVPVEPLQISRELASFKVEKEEAASRKERAEELFLEQVIELLSRADAARD YQVVERCNVPRCTVHGGSAMYQSVRCMVEMHHTNMHRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006638 [exp]	0	1
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	5.4	0.8287
AT1G20180			Protein of unknown function (D...		Lus10017286 [exp]	6.2	0.8064
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018377 [exp]	8.4	0.7888
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10024177 [exp]	8.7	0.8024
AT1G64610			Transducin/WD40 repeat-like su...		Lus10017312 [exp]	12.0	0.7960
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10039402 [exp]	15.1	0.7770
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10005420 [exp]	17.9	0.7791
AT4G27270			Quinone reductase family prote...		Lus10020076 [exp]	18.7	0.7904
					Lus10016654 [exp]	21.0	0.7709
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	22.8	0.7933

Compare expression of checked genes

Lus10006638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.