Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14615 55 / 1e-11 unknown protein AT1G52825 43 / 4e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039402 [exp] 122 / 6e-34 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10041178 [exp] 91 / 5e-26 AT4G14615 93 / 9e-27 unknown protein Lus10021896 [exp] 54 / 9e-11 AT4G14615 52 / 7e-10 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G079100 [exp] 57 / 3e-12 AT4G14615 115 / 1e-35 unknown protein Potri.008G160101 [exp] 53 / 6e-11 AT4G14615 118 / 6e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006639 pacid=23145308 polypeptide=Lus10006639 locus=Lus10006639.g ID=Lus10006639.BGIv1.0 annot-version=v1.0 ATGTCGAACATTGGAGTTTCGAATGTGGTTGTAGAGGTAGCGAAGTTCGCGGTGTATGTCGGCGTGCCAGTCTTTCTTATGAGCTTCGCCGCCGACGCCA AGTTCCTCCACAAGCTAACCGGCAAGCGAGAGTACATAGTGTATCCAGCAGAGCTGGAAAGGCCTCCATCCACAGAAGAACTCAGAGACAATGCCCGGCA ATTAGCTCGAGACAGGAAAGCTCAGCTGAGGTGA
AA sequence Show only first row Show all	>Lus10006639 pacid=23145308 polypeptide=Lus10006639 locus=Lus10006639.g ID=Lus10006639.BGIv1.0 annot-version=v1.0 MSNIGVSNVVVEVAKFAVYVGVPVFLMSFAADAKFLHKLTGKREYIVYPAELERPPSTEELRDNARQLARDRKAQLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14615			unknown protein		Lus10006639 [exp]	0	1
AT2G37240			Thioredoxin superfamily protei...		Lus10014017 [exp]	2.0	0.9516
AT5G42070			unknown protein		Lus10023063 [exp]	2.4	0.9555
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10021923 [exp]	4.2	0.9475
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10009352 [exp]	5.5	0.9467
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10006188 [exp]	6.0	0.9470
AT2G46100			Nuclear transport factor 2 (NT...		Lus10007918 [exp]	6.7	0.9357
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10020508 [exp]	7.9	0.9443
AT3G26070			Plastid-lipid associated prote...		Lus10020982 [exp]	7.9	0.9295
AT4G38225			unknown protein		Lus10013843 [exp]	8.0	0.9345
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	8.5	0.9467

Compare expression of checked genes

Lus10006639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.