Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23000 270 / 5e-87 PKS7, ATSRPK1, ATSR2, CIPK7, SnRK3.10 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) AT4G14580 253 / 4e-80 CIPK4, SnRK3.3 SNF1-RELATED PROTEIN KINASE 3.3, CBL-interacting protein kinase 4 (.1) AT5G01810 220 / 2e-67 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G45820 208 / 9e-63 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G30960 204 / 2e-61 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G58380 204 / 4e-61 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G10930 198 / 5e-59 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT2G30360 197 / 1e-58 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT5G21326 194 / 1e-57 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G30270 192 / 2e-56 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039404 [exp] 508 / 0 AT3G23000 356 / 2e-121 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Lus10021892 [exp] 405 / 6e-139 AT3G23000 427 / 2e-147 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Lus10041173 [exp] 243 / 2e-79 AT4G14580 137 / 1e-38 SNF1-RELATED PROTEIN KINASE 3.3, CBL-interacting protein kinase 4 (.1) Lus10022749 [exp] 219 / 6e-67 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 213 / 3e-64 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 208 / 1e-62 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10008582 [exp] 206 / 3e-62 AT5G58380 570 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10025245 [exp] 203 / 7e-61 AT5G01820 504 / 1e-177 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Lus10021852 [exp] 202 / 1e-60 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160200 [exp] 344 / 1e-115 AT3G23000 399 / 7e-137 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Potri.010G079000 [exp] 333 / 2e-111 AT3G23000 402 / 6e-138 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Potri.019G127500 [exp] 222 / 6e-68 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G263500 [exp] 219 / 4e-67 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.013G156000 [exp] 214 / 3e-65 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 214 / 6e-65 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.016G133500 [exp] 208 / 2e-62 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G019900 [exp] 206 / 6e-62 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.006G186200 [exp] 202 / 1e-60 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.019G128100 [exp] 200 / 6e-60 AT2G30360 531 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10006640 pacid=23145298 polypeptide=Lus10006640 locus=Lus10006640.g ID=Lus10006640.BGIv1.0 annot-version=v1.0 ATGGAGCTACGGCCACAACAACCCTCACGCCACCAAGAGCCTCCACCACCACCTCCAGTTCCACCGCCGCAACAAAGGCAGCAGCAGCAACAGCCACGGA AGAACCCGCTCCAGCGGACCACTTCCATTCCCCCTACTCTACTCAACAAATACAGAATGGGAAAGCTTCTCGGCCGCGGCAGCTTCGCCAAGGTGTTCGC CGCCCACTCAATCGCCGACGGCAAGCAGGTGGCGATCAAGATAATCGACAAGACAAAGACCGAGTCCTTCATGGAGCCCAAAATCATCTGCGAGATCAAG GCGATGCACCGCCTCCATGTCAAGCCGCAGAACCTCCTCCTCGATTCCGACGGCAACTTGAAGGTCTCCGACTTCGGATTGTCCGCCTTGGCCGAGGCCG CGGAGGCTAAGAACGGCGTGAACGGGATCCTCCAGACGGCGTGCGGTACGCCTGCGTTCACGGCGCCGGAAGTTGTGTACAGGAAAGGCTACGACGGGGA GAAAGCCGACGCCTGGTCTTGCGGAGTGATCCTGTTCTTCCTTCTATCGGCTTCTCTGCCATTCGATGACAGCAATTTGGCTCTGATGTACAAGAAAATC CACAGGAAGCAGTATCAGATTCCGGCTTGGGTGTCGAAAACGGCGAAATCGATTGTCCACCAACTGCTCGACCCAAATCCCCAAACCAGGATGAGCATAG AAAATCTAATGAAGCACCCTTGGTTTTTGAACAAGCTAGAAACGCCTGCGCAGAGGAGTCTATTGGAGTCGGAGGAGTACTCGAAGTCGTGTAAATTCAA CAGCACGAGGGTGTCGAGCTTCAACGCGTTCGACATAATATCCATGTCGTCGGGGCTGGATTTGTCGGGGCTGTTCGAGGCAACGTGCAGGAAGGAGAAG AGATTCACATCCAAGGAGAGGTTAGGAAGAGTAATGGAAAGGGTGAGAGATGTAGGGAAGAAGCTGGAATACGTAGTGGAAGAAGGGAAAGGAGGAGGAG CAATCGGGTTGGCGAAAGGGAAGCTTGTATTGGTGGTTGAAGCCATGGAAATAGCAGAGAAGATGGTGGTGGCTGATGTCAGGGTTGCCAAAGGTTGTGG GGTGGAGTTTGAGCAAGTTCATTTGGTTGACTTGAAGAACGGACTTGGGGATCTTGTGCTCGAATGGCATGGTGACCATCATCATCTTCATCATGTTGCA GCGTAG
AA sequence Show only first row Show all	>Lus10006640 pacid=23145298 polypeptide=Lus10006640 locus=Lus10006640.g ID=Lus10006640.BGIv1.0 annot-version=v1.0 MELRPQQPSRHQEPPPPPPVPPPQQRQQQQQPRKNPLQRTTSIPPTLLNKYRMGKLLGRGSFAKVFAAHSIADGKQVAIKIIDKTKTESFMEPKIICEIK AMHRLHVKPQNLLLDSDGNLKVSDFGLSALAEAAEAKNGVNGILQTACGTPAFTAPEVVYRKGYDGEKADAWSCGVILFFLLSASLPFDDSNLALMYKKI HRKQYQIPAWVSKTAKSIVHQLLDPNPQTRMSIENLMKHPWFLNKLETPAQRSLLESEEYSKSCKFNSTRVSSFNAFDIISMSSGLDLSGLFEATCRKEK RFTSKERLGRVMERVRDVGKKLEYVVEEGKGGGAIGLAKGKLVLVVEAMEIAEKMVVADVRVAKGCGVEFEQVHLVDLKNGLGDLVLEWHGDHHHLHHVA A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10006640 [exp]	0	1
AT1G72300			Leucine-rich receptor-like pro...		Lus10019722 [exp]	4.5	0.8955
AT2G20650			RING/U-box superfamily protein...		Lus10018613 [exp]	7.7	0.9145
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10005943 [exp]	13.1	0.9086
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10004831 [exp]	13.3	0.8840
AT1G77280			Protein kinase protein with ad...		Lus10000968 [exp]	13.7	0.8488
AT1G27500			Tetratricopeptide repeat (TPR)...		Lus10042120 [exp]	14.7	0.8907
AT1G72300			Leucine-rich receptor-like pro...		Lus10016395 [exp]	18.2	0.8744
AT5G42710			unknown protein		Lus10010807 [exp]	20.0	0.8989
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10009839 [exp]	24.9	0.9022
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	31.9	0.8925

Compare expression of checked genes

Lus10006640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.