Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14570 192 / 1e-55 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039405 [exp] 386 / 2e-129 AT4G14570 902 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10015363 [exp] 383 / 1e-127 AT4G14570 871 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160400 [exp] 265 / 5e-82 AT4G14570 971 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10006641 pacid=23145314 polypeptide=Lus10006641 locus=Lus10006641.g ID=Lus10006641.BGIv1.0 annot-version=v1.0 ATGATAACTTTTACTTGCAATGTTAGTCAGTGGAGAGGTTCAGCCTGTCGAAGGAATTGCGAAACATTTGAGGGTTGGCCAAGTTGTTTGGTGTTTGTTG GCTGGTCATTAGAGAGAAGAAAGCTTGGCATAAGGCATTGCTATAGTAGGCCTTGTGCCTTATGTGCTGCTAGAGCACCATTGTTTGGGTCAGATGCTAT ATGTGAACAGAAGGACATTTCTGTGCTAGACTCATCTGTGATTAATGTAACTCAGGGGTTAGGAAGTGTCTTCTTCCCTCTGTTCTGCCCAGATGGAAGA TCTCTAGTGTTTTTATCTGCTAGAAGCTGTGTGGACTCAGGTGCACATTGGGGAACTGAATCCCTTCATCGAATTGATTGGATTGCTGACCTAAAGATTC CAGTCGTTCAATGTTCAGAGGATGGTGGCTTTCCAGGGCTATACTCTGCGGGTTTTCTTCGTAATCCATGGCTTTCTGATGGATCCACGATTGTTCTAAA CTCTGTGTGGCACAGCAGTGAGGTTATACTGGCTGTGAATGTTGTAAGTGGTGTTCTGAGGCGAATCAGTCCTAGTGAATCGAATTCTGGATGGCATGCT CTTTCGCTAGACGATGACAGCATCATTGCTGTTTCAAGCAGCCCAGTAGATCTTCCTGAAATCAAGTATGGGCATCTTGCCAATAAAGAAGTTCAAACCT CTGCTTTGAATTGGTTAAGCGTGCCAAGTCCCATGATTAATTGCTCTGACATGGTGAAAACACCAACACTGTTTCTCATAGGTGCAAATGATCTCCCCGT ACCACCGTCCAATGGCATACAATACGCTCGAGCATTGAAGGAGAAAGGAGTCGAGACAAAGATGATAATATTTCCGAACGATGTTCATGGAATCGATAGA CCGGAATCTGACTATGAGAGCTTCCTCAACATCGATGTTTGGTTCAAGAAGTACTGCAACTGA
AA sequence Show only first row Show all	>Lus10006641 pacid=23145314 polypeptide=Lus10006641 locus=Lus10006641.g ID=Lus10006641.BGIv1.0 annot-version=v1.0 MITFTCNVSQWRGSACRRNCETFEGWPSCLVFVGWSLERRKLGIRHCYSRPCALCAARAPLFGSDAICEQKDISVLDSSVINVTQGLGSVFFPLFCPDGR SLVFLSARSCVDSGAHWGTESLHRIDWIADLKIPVVQCSEDGGFPGLYSAGFLRNPWLSDGSTIVLNSVWHSSEVILAVNVVSGVLRRISPSESNSGWHA LSLDDDSIIAVSSSPVDLPEIKYGHLANKEVQTSALNWLSVPSPMINCSDMVKTPTLFLIGANDLPVPPSNGIQYARALKEKGVETKMIIFPNDVHGIDR PESDYESFLNIDVWFKKYCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Lus10006641 [exp]	0	1
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10027123 [exp]	14.0	0.8612
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	21.8	0.8601
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10029473 [exp]	25.2	0.8537
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	27.3	0.8581
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	35.2	0.8579
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Lus10006625 [exp]	45.8	0.7478
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	46.9	0.8476
AT1G16290			unknown protein		Lus10036958 [exp]	47.6	0.8471
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018194 [exp]	48.3	0.8508
AT3G63480			ATP binding microtubule motor ...		Lus10029983 [exp]	50.0	0.7701

Compare expression of checked genes

Lus10006641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.