Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48310 826 / 0 CHR18, CHA18 chromatin remodeling factor18 (.1) AT5G07810 252 / 1e-71 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1) AT2G13370 134 / 5e-32 CHR5 chromatin remodeling 5 (.1) AT2G25170 131 / 2e-31 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT3G06010 129 / 8e-31 ATCHR12 Homeotic gene regulator (.1) AT5G19310 129 / 2e-30 Homeotic gene regulator (.1) AT4G31900 120 / 8e-28 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT3G06400 119 / 2e-27 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT2G28290 119 / 3e-27 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G44800 116 / 2e-26 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039409 [exp] 1141 / 0 AT1G48310 778 / 0.0 chromatin remodeling factor18 (.1) Lus10003469 [exp] 263 / 4e-75 AT5G07810 1276 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1) Lus10039140 [exp] 149 / 2e-37 AT2G02090 1107 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10005339 [exp] 142 / 1e-34 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10041019 [exp] 137 / 5e-33 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10012798 [exp] 130 / 1e-30 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10013792 [exp] 127 / 4e-30 AT2G02090 1034 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10022423 [exp] 127 / 6e-30 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10013625 [exp] 126 / 1e-29 AT3G54280 2684 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G003300 [exp] 870 / 0 AT1G48310 932 / 0.0 chromatin remodeling factor18 (.1) Potri.012G067000 [exp] 264 / 2e-75 AT5G07810 1185 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1) Potri.010G099000 [exp] 148 / 4e-37 AT2G02090 1061 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.006G262200 [exp] 145 / 9e-36 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.018G021100 [exp] 137 / 2e-33 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.009G047800 [exp] 135 / 1e-32 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.013G068400 [exp] 131 / 3e-31 AT3G54280 2717 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) Potri.001G253400 [exp] 130 / 9e-31 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.008G195900 [exp] 130 / 1e-30 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.010G019150 [exp] 129 / 2e-30 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10006642 pacid=23145297 polypeptide=Lus10006642 locus=Lus10006642.g ID=Lus10006642.BGIv1.0 annot-version=v1.0 ATGGAAGACGATGATGAATGGGGTTTAAGCGCTGAAGAACTTGACGCCCTTGAGAGGGATGCTATCCAGAAGATCGCTCAGCAGCGCCAACAAATGTGCG GCGGCTTATCTTCCTCTTCATTTTCTTCCGTCACTCAAAATCAAAACCCACCAAGAAACAGTAAACCCTCCGCCGCTTGTTCATCTTACCGGACAGTGGT TGACGCTCTGCGCAGGGTTCCTAAAGCCAGTTGGAATGCAAAAGAAAGATTATGGATGTTCCCAATAGCTTCATTGCTATCAGCTGAAAAAGCTGTAAGA GAGGTATCTGGTTTCACTGTTGAGGTAGAAAGCTTAGATCCCTTGGTGCGGCGTGCTATTACTGTTGCTTCCACTGTCCCAGATCTTCTTGTCTTCTTCC AAAATTTTGCTTTCAGGTTTGTGTTGCAACATGGAGGCCGCGCTCTACTTGCAGATGAAATGGGACTTGGGAAGACCTTACAAGCTATAGCTGTAGCTGC ATGCGTTCGTGATTCCTGGCCCGTTCTTATTCTTTCACCTTCCTCCTTGCGTTTGCATTGGGCTTCAATGATTCAACAATGGCTTGATATCCCTCCATCC GACATAGTACTTGTTATCTCATACAAATTGGCATCTCCACAGGTTGTCTTATCTCAATGGAGTGGGTCTAACAGAGGTGGTTTCTCTCTCGTATCCTCGG CCAAGGATACCATAAATCTTGATGGCTTATTCAATATCATCTCTTATGATGTTGTGCAAAAGTTGCAAAAATCTCTTATGGCTTCAAAGTTTCAGGCAAG TGTAATATTGATTGTGATTGCAGATGAATCTCACTTTTTAAAAAACGCTCAAGCAAAGAGGACAACTGCATCCCTCCCTGTTATAAAGAATGCTCAATAT GCAATATTGCTTAGTGGAACTCCTGCATTGTCCAGGCCTATAGAGCTGTTCAAGCAGCTTGAAGCGCTGTATCCTGATGTATACAAGAACGTTCATGAGT ATGGAAATCGTTATTGTAAGGGGGGAGTGTTTGGAGCTTATCAAGGTGCCAGCAACCATGAAGAACTGCACAACTTGATGAAGACGACTCTGATGATTCG CAGACTTAAAAAAGATGTTCTATCTGAGCTTCCTCAGAAGCGTCGGCAGCAGGTCTTCCTGGAATTGGCTGAAAAGGACATGAAAAATATCAATGCATTG TTTCGTGAGCTAGAAGTGATCAAAACAAGAATTAAGGCATGCACATCAGAAGAGGAGGTTACATCACTGGAATTTAAATTTGTGCAGAAGAATATTATCA GTAAGATATATACAGATTCTGCTGAAGCGAAGGTTCCTGCCGTTCTGGACTATTTGGCTACTGTAGTTGAGGCAGGCTGCAAGTTTCTTGTATTTGCTCA CCATCGGCAAATGATCGATTCAGTTCATCAGTATTTGCTTAAGAAGAAAGTAGGTTGCATTCGAATTGATGGTGGTACCCCGTCTGCTGATAGGCAAGCT CTTGTAACTGATTTCCAGGAGAATGATTCTATTAAAGCTGCAGTTCTATCCATCAAAGCTGGGGGTGTTGGATTAACGCTAACAGCTGCAAGCACTGTAA TTTTTGCTGAACTGGCCTGGACTCCTGGGGACTTGATTCAAGCTGAAGATCGGGTTCATAGGATCGGCCAGGTTTCTTCAGTCAATATATATTACCTTCT TGCAAATGATACCGTTGATGACATTATATGGGATGTCGTCCAGAGCAAGTTAGAAAATTTGGGACAGGTGGTTGCTCTCTCTTTCTTTCTTTTTTCCTAT GTTGGTTTGTTTACTTTGGTCCATGCGTTTTTCAAGGATATGGTCACCATTTTGAATCAGATGCTGAATGGACATGAGGATACGTTGGAGGTTTCAAGGG ATGAGAATCAGCTAATGGTGGCTACTAACAGGCACAGCACCAAGCCGATGAGAAAACAGGAAACGCTCGACTGCTTTTTGAAGCGATGTAGGAAGACAGT AGATGAAGAGGAAGAAGAGCAGCAGCAGCAGTCTAAGCTCAAATTTCCCAGGCACTGA
AA sequence Show only first row Show all	>Lus10006642 pacid=23145297 polypeptide=Lus10006642 locus=Lus10006642.g ID=Lus10006642.BGIv1.0 annot-version=v1.0 MEDDDEWGLSAEELDALERDAIQKIAQQRQQMCGGLSSSSFSSVTQNQNPPRNSKPSAACSSYRTVVDALRRVPKASWNAKERLWMFPIASLLSAEKAVR EVSGFTVEVESLDPLVRRAITVASTVPDLLVFFQNFAFRFVLQHGGRALLADEMGLGKTLQAIAVAACVRDSWPVLILSPSSLRLHWASMIQQWLDIPPS DIVLVISYKLASPQVVLSQWSGSNRGGFSLVSSAKDTINLDGLFNIISYDVVQKLQKSLMASKFQASVILIVIADESHFLKNAQAKRTTASLPVIKNAQY AILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGAYQGASNHEELHNLMKTTLMIRRLKKDVLSELPQKRRQQVFLELAEKDMKNINAL FRELEVIKTRIKACTSEEEVTSLEFKFVQKNIISKIYTDSAEAKVPAVLDYLATVVEAGCKFLVFAHHRQMIDSVHQYLLKKKVGCIRIDGGTPSADRQA LVTDFQENDSIKAAVLSIKAGGVGLTLTAASTVIFAELAWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQVVALSFFLFSY VGLFTLVHAFFKDMVTILNQMLNGHEDTLEVSRDENQLMVATNRHSTKPMRKQETLDCFLKRCRKTVDEEEEEQQQQSKLKFPRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10006642 [exp]	0	1
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10003059 [exp]	1.0	0.7082
AT5G19020		MEF18	mitochondrial editing factor ...		Lus10019079 [exp]	6.3	0.6776
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Lus10035763 [exp]	8.7	0.6544
AT4G08280			Thioredoxin superfamily protei...		Lus10028031 [exp]	10.6	0.6193
AT4G05440		EDA35	embryo sac development arrest ...		Lus10006898 [exp]	14.0	0.5816
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	15.7	0.6358
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10028668 [exp]	17.6	0.5429
AT4G20020			unknown protein		Lus10037713 [exp]	22.2	0.5977
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10043171 [exp]	22.6	0.5978
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	27.9	0.5651

Compare expression of checked genes

Lus10006642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.