Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15080 472 / 3e-164 Protein kinase superfamily protein (.1) AT3G01300 468 / 8e-163 Protein kinase superfamily protein (.1) AT3G28690 460 / 2e-161 Protein kinase superfamily protein (.1.2.3) AT5G01020 416 / 2e-143 Protein kinase superfamily protein (.1) AT2G28930 414 / 9e-143 APK1B protein kinase 1B (.1.2.3) AT1G07570 410 / 3e-141 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 409 / 4e-141 NAK Protein kinase superfamily protein (.1.2) AT2G39660 395 / 1e-135 BIK1 botrytis-induced kinase1 (.1) AT3G55450 392 / 2e-134 PBL1 PBS1-like 1 (.1.2) AT2G02800 390 / 4e-133 Kin2, APK2B protein kinase 2B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038087 [exp] 810 / 0 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10030668 [exp] 479 / 4e-167 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 479 / 7e-167 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10030796 [exp] 458 / 9e-159 AT5G15080 691 / 0.0 Protein kinase superfamily protein (.1) Lus10024391 [exp] 415 / 2e-143 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 414 / 2e-143 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 415 / 3e-143 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036762 [exp] 415 / 2e-142 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10000954 [exp] 402 / 3e-138 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066100 [exp] 691 / 0 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.018G127300 [exp] 688 / 0 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 477 / 1e-166 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 475 / 1e-165 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 470 / 7e-164 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 463 / 3e-161 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 462 / 7e-161 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.009G031300 [exp] 424 / 1e-146 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 424 / 1e-146 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G143200 [exp] 424 / 2e-146 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10006643 pacid=23158639 polypeptide=Lus10006643 locus=Lus10006643.g ID=Lus10006643.BGIv1.0 annot-version=v1.0 ATGGAGGAGAACAAGTACTGTGGGTGTTGGGCTGTGCTTAAGCGAAGTGGTGCCAACTGCAGAAAATCCTCCTCCGCCTCTCCCAACGCCATCCCTCGAA CTAGCCTTGTTTACGACGCTGCTACAGAGACGAGGTACTTGAACGCCAGCAATCGAGAATTGTGTGCGCCGAACGAAGAAAAGCTGTCATCTGATCACAA ACCTGATCCGCCGCCATTGCTGCAGTTCAGCTTCCAGGAACTGAAATCGGCGACTGGCAATTTCAGGGCGGACAGCATCCTGGGAGAAGGAGGGTTCGGG TATGTGTTCAAAGGTTGGATCGAGGAGAACGGGACCGGTCCGGCAAAACCCGGTTGCGGAATCACCGTCGCCGTCAAGAGCTTGAAGCCTGACGGACTCC AAGGCCATAGAGAATGGGTGGCAGAAGTGGATTTCCTGGGGCAGCTACATCACCCAAATTTGGTTAAGCTGATTGGTTACTGCATTGAAGATGACCAAAG GGTACTTGTTTACGAGTTCATGACTAGGGGCAGCCTTGAAAATCATCTCTTCAGAAGGACGATTCCTCTGCCATGGTCAAACAGGATAAAGATAGCCATT GGAGCAGCAAAAGGGCTGGCATTTCTCCATGGAGGACCTGAGCCCGTTATCTACAGAGACTTCAAGACTTCTAACATTTTGCTTGATTCTGAGTACAACG CAAAGCTTTCAGATTTCGGACTGGCGAAAGCAGGTCCTCAGGGAGACAAAACTCACGTCTCTACAAGGGTTGTTGGCACTTACGGATATGCTGCTCCAGA GTATGTAATGACAGGTCACTTGACGTCAAAGAGTGATGTATACAGCTTTGGAGTTGTAATCCTAGAGATCTTAACAGGGAGGAGATCAATGGACAAGAAA AGACCAAGTGGTGAGCAAAACCTTGTATCCTGGGCAAGACCATACTTAGCCGACAAAAGGAAGCTCTACCAATTAGTAGACCCTCGTCTTGAACTCAACT ACTCCATCAAGGGTGTCCACAAGGTCTCTCAGCTTGCATACACCTGCCTTAGCAGGGACCCTAAAGCCCGACCCACAATGGATGAAGTGGTGAAGCTCCT TACTCCATTGCAGGACCTCAATGACCTTGCCATCTTGTCTAATCACCACCATTTTAGGATCATGTCTCAACAAGGCAGGAGGAAGAACAAGTCGTCTAAT CATGATCATCATGCTCACTCTCATGCTAATCATCATCTGGTTCGAAACTATAATCATAATGGTTCCACCAAGAACTTGAACATTAGGGATTCTCCCCTCA ATGCTTCTGGGAAGCAAAGATGCAAGTGA
AA sequence Show only first row Show all	>Lus10006643 pacid=23158639 polypeptide=Lus10006643 locus=Lus10006643.g ID=Lus10006643.BGIv1.0 annot-version=v1.0 MEENKYCGCWAVLKRSGANCRKSSSASPNAIPRTSLVYDAATETRYLNASNRELCAPNEEKLSSDHKPDPPPLLQFSFQELKSATGNFRADSILGEGGFG YVFKGWIEENGTGPAKPGCGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRVLVYEFMTRGSLENHLFRRTIPLPWSNRIKIAI GAAKGLAFLHGGPEPVIYRDFKTSNILLDSEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTSKSDVYSFGVVILEILTGRRSMDKK RPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSIKGVHKVSQLAYTCLSRDPKARPTMDEVVKLLTPLQDLNDLAILSNHHHFRIMSQQGRRKNKSSN HDHHAHSHANHHLVRNYNHNGSTKNLNIRDSPLNASGKQRCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15080			Protein kinase superfamily pro...		Lus10006643 [exp]	0	1
AT3G20650			mRNA capping enzyme family pro...		Lus10039035 [exp]	1.7	0.8549
AT5G44005			unknown protein		Lus10003608 [exp]	1.7	0.9181
AT1G49230			RING/U-box superfamily protein...		Lus10006787 [exp]	2.4	0.8573
AT5G44005			unknown protein		Lus10008220 [exp]	4.5	0.8543
AT5G47740			Adenine nucleotide alpha hydro...		Lus10043338 [exp]	7.9	0.8198
AT5G50150			Protein of Unknown Function (D...		Lus10042092 [exp]	9.2	0.8499
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10040109 [exp]	9.3	0.8133
AT3G11590			unknown protein		Lus10017001 [exp]	9.4	0.8406
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001424 [exp]	9.5	0.8332
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10042195 [exp]	9.8	0.8390

Compare expression of checked genes

Lus10006643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.