Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07490 140 / 9e-42 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT1G05990 134 / 1e-39 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT4G03290 134 / 1e-39 EF hand calcium-binding protein family (.1) AT2G43290 129 / 7e-37 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT4G12860 127 / 9e-37 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1) AT3G59440 127 / 4e-36 Calcium-binding EF-hand family protein (.1) AT1G73630 102 / 4e-27 EF hand calcium-binding protein family (.1) AT5G37770 101 / 1e-26 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G18210 98 / 2e-25 Calcium-binding EF-hand family protein (.1.2) AT2G27030 86 / 2e-20 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038088 [exp] 350 / 4e-123 AT3G07490 150 / 7e-46 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10027701 [exp] 251 / 3e-84 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Lus10039986 [exp] 213 / 1e-69 AT3G07490 132 / 3e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10009564 [exp] 135 / 4e-40 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10018012 [exp] 108 / 5e-29 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10020389 [exp] 97 / 5e-26 AT3G07490 130 / 1e-40 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10009127 [exp] 101 / 2e-25 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10009059 [exp] 97 / 9e-25 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10031345 [exp] 93 / 3e-23 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127100 [exp] 201 / 1e-64 AT3G07490 132 / 6e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.006G065900 [exp] 199 / 4e-64 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.002G239100 [exp] 141 / 2e-42 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 134 / 7e-39 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.017G029700 [exp] 133 / 2e-38 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.012G048200 [exp] 107 / 8e-29 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.015G039500 [exp] 102 / 5e-27 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.004G089400 [exp] 99 / 1e-25 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.017G126200 [exp] 98 / 2e-25 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.010G107100 [exp] 89 / 9e-22 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10006644 pacid=23158632 polypeptide=Lus10006644 locus=Lus10006644.g ID=Lus10006644.BGIv1.0 annot-version=v1.0 ATGATTTCCGCCGCTCTATTACTCCTACTTCTCTTCCTCGCCGGTCTCTTCAATCTCAATTCCTATCTCCCTTCGAAGAAGCTCTACGCCTGGCTCCACT CCCTCTTCCTCCCGCGCGCCGTCACGGCAGCGCTAGAGAAGGTCAAATCCGCTCCATTACAAGCCGAATCAAGCAAGTCTGTTACTACTGTTTCCAAGAG TGATCAGATCAGTAACAAGAAGAAGACGGAGGACACCGACGATGAGATGACGAGCGTGTTCGCCACGTTCGACAAAAACGGTGACGGATTCATCACGAAG CAGGAACTGAAGGAGTCGCTGAAGAACATACGGATCATAGTGACGGAGACGGAGGTTGAGGAGATGGTAGTGAAGGTAGATTCAAACGGAGACGGATTAA TCGACTTGGAGGAGTTCAAGATCCTGTGCCGGAAAATATTGTCGGGCGGAGAAGATCAGATTAGTGGCTGTGGAGGTGCGGCAGGGGAAGGAGGAGGAGG TGAATTGAAGAAGGCGTTCGATGTATTCGACAGGAATAAAGATGGATTGATAACAGTGGAGGAGCTATGGTGGGTGCTGTCGTCGTTAGGGTTGAAGGAA GGGAAGAGGATTGAGGATTGCAAGGAGATGATAAGGAGAGTTGACGTTGACGGAGACGGGATGGTTAACTTCGACGAGTTCAAGATGATGATGAGAAGTG GAGGCGGTAAGCTTCTTCTTCCCGTATTCTGA
AA sequence Show only first row Show all	>Lus10006644 pacid=23158632 polypeptide=Lus10006644 locus=Lus10006644.g ID=Lus10006644.BGIv1.0 annot-version=v1.0 MISAALLLLLLFLAGLFNLNSYLPSKKLYAWLHSLFLPRAVTAALEKVKSAPLQAESSKSVTTVSKSDQISNKKKTEDTDDEMTSVFATFDKNGDGFITK QELKESLKNIRIIVTETEVEEMVVKVDSNGDGLIDLEEFKILCRKILSGGEDQISGCGGAAGEGGGGELKKAFDVFDRNKDGLITVEELWWVLSSLGLKE GKRIEDCKEMIRRVDVDGDGMVNFDEFKMMMRSGGGKLLLPVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10006644 [exp]	0	1
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10021914 [exp]	6.8	0.9018
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	8.4	0.9023
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	11.0	0.8984
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10023242 [exp]	17.5	0.8900
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	17.7	0.8990
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Lus10004212 [exp]	19.4	0.8943
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10031378 [exp]	22.9	0.8786
AT5G11970			Protein of unknown function (D...		Lus10017155 [exp]	25.0	0.8866
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10026834 [exp]	25.0	0.8678
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	25.2	0.8952

Compare expression of checked genes

Lus10006644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.