Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32272 324 / 6e-110 Nucleotide/sugar transporter family protein (.1.2) AT4G31600 79 / 2e-16 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT2G13650 51 / 6e-07 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT1G07290 46 / 3e-05 GONST2 golgi nucleotide sugar transporter 2 (.1) AT1G77610 42 / 0.0003 EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038090 [exp] 435 / 2e-154 AT4G32272 410 / 1e-144 Nucleotide/sugar transporter family protein (.1.2) Lus10020119 [exp] 87 / 3e-19 AT4G31600 530 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10026922 [exp] 77 / 1e-15 AT4G31600 517 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10024126 [exp] 62 / 1e-10 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005865 [exp] 46 / 2e-05 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1) Lus10001205 [exp] 44 / 0.0001 AT1G07290 465 / 4e-164 golgi nucleotide sugar transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127400 [exp] 403 / 7e-141 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.006G255400 [exp] 349 / 1e-119 AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) Potri.018G026600 [exp] 338 / 2e-115 AT4G32272 493 / 2e-176 Nucleotide/sugar transporter family protein (.1.2) Potri.006G270700 [exp] 81 / 4e-17 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.018G009400 [exp] 76 / 4e-15 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.005G062900 [exp] 60 / 1e-09 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.007G106400 [exp] 59 / 2e-09 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.009G044000 [exp] 45 / 7e-05 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006645 pacid=23158635 polypeptide=Lus10006645 locus=Lus10006645.g ID=Lus10006645.BGIv1.0 annot-version=v1.0 ATGGAGTCGGAGAAGAAGACCGAGAAGCTGCCTCTATTTACTCCAAACGAGAGCAAGCAGCATACGGATGAGTCCGACGCCATGAGCAGGAAAGGAGTTT TCGCTGCCGCTTCTTACATGGCCTCTGCAGTGCTCTTGGTAATGTTCAATAAAGCAGCCCTTTCTTCATACAGCTTCCCTTATGCAAACGTCATCACGCT TCTTCAGATAATATGCTCGTGCATTTTACTCTATGCAATGAAATACTGGAAGCTTGTATCGTTTACAGTTAGTGAACGGCCAACCTCTACTTCCAACGCA GCTAAACTGGTACCCCTGAAGACATTAGCTCGAACAGTTCCTCTAGCAATTTCGTATTTGCTTTACATGTTAGTCACCATGGAATCTGTGCGTGGCATTA ATGTCCCCATGTATGCCACCCTCAGAAGGACTACAGTGGCTTTCACCATGGTAGTTGAGTATCTCTTGACAGGGAAGAAACATTCATTGCCTGTTATTGG CAGTGTGGGGATAATTATACTTGGAGCATTCATTGCTGGAGCTCGAGACTTGTCATTTGATGCCTACAGCTATGCTGTCGTCTTCATTGCAAATATCTGC ACAGCAATATATCTTGCTTCGATTGCTCGGATTGGTAGTGGCTCCAGTAGTCTTCTAATTGAGTTTTTACTTTTTCGTAGCAAGAAGAATTCGGAACACC TCCTCACATACTCTTTGATTCTTTCAGGAAAATCTAGTGGCCTCAATAGCTTTGGCCTCATGTGGTGCAATGGCATTATATGTTTACCAGTATTACTAGT CTGGACATCAGTCAGTGGGGATCTAGGATCCCTAAGGAACTTTCCCTATCTGTTATATCCAGGATTTCAGGTTGTGATGCTTCTATCATGTATCCTGGCT TTCTTGATCAATTACTCTGTGTTCTTAAACACAACAATTAATTCAGCATTGACACAAACAATCTGCGGTAATTTGAAGGTACTTGCACTTTCTATTGATC AAAGAAAACATCTATATATATATACGTTAGGTTCGAACTTCGAACATGGATCCTAA
AA sequence Show only first row Show all	>Lus10006645 pacid=23158635 polypeptide=Lus10006645 locus=Lus10006645.g ID=Lus10006645.BGIv1.0 annot-version=v1.0 MESEKKTEKLPLFTPNESKQHTDESDAMSRKGVFAAASYMASAVLLVMFNKAALSSYSFPYANVITLLQIICSCILLYAMKYWKLVSFTVSERPTSTSNA AKLVPLKTLARTVPLAISYLLYMLVTMESVRGINVPMYATLRRTTVAFTMVVEYLLTGKKHSLPVIGSVGIIILGAFIAGARDLSFDAYSYAVVFIANIC TAIYLASIARIGSGSSSLLIEFLLFRSKKNSEHLLTYSLILSGKSSGLNSFGLMWCNGIICLPVLLVWTSVSGDLGSLRNFPYLLYPGFQVVMLLSCILA FLINYSVFLNTTINSALTQTICGNLKVLALSIDQRKHLYIYTLGSNFEHGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32272			Nucleotide/sugar transporter f...		Lus10006645 [exp]	0	1
AT4G12010			Disease resistance protein (TI...		Lus10019654 [exp]	2.0	0.9032
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	2.0	0.9018
AT1G69340			appr-1-p processing enzyme fam...		Lus10036809 [exp]	3.2	0.8925
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10009796 [exp]	4.2	0.8949
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10017796 [exp]	6.2	0.8632
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10041792 [exp]	6.9	0.8653
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10024112 [exp]	7.3	0.8564
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	8.0	0.8933
AT5G46390			Peptidase S41 family protein (...		Lus10004545 [exp]	8.5	0.8485
AT1G07480			Transcription factor IIA, alph...		Lus10001563 [exp]	9.2	0.8707

Compare expression of checked genes

Lus10006645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.