Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52580 936 / 0 RabGAP/TBC domain-containing protein (.1.2) AT4G28550 150 / 2e-39 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 144 / 2e-37 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G27100 140 / 5e-36 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 140 / 1e-35 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G41940 132 / 3e-32 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G49350 127 / 8e-31 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 122 / 6e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G24390 118 / 7e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G59570 107 / 6e-24 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038091 [exp] 1293 / 0 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 1042 / 0 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10027697 [exp] 558 / 0 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10027698 [exp] 421 / 2e-143 AT5G52580 299 / 3e-96 RabGAP/TBC domain-containing protein (.1.2) Lus10022905 [exp] 149 / 1e-38 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10024920 [exp] 147 / 3e-38 AT4G28550 618 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023237 [exp] 137 / 3e-34 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008872 [exp] 135 / 2e-33 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10011159 [exp] 129 / 1e-31 AT4G27100 634 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066300 [exp] 1045 / 0 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.018G127500 [exp] 1004 / 0 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.005G227400 [exp] 153 / 2e-40 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.015G007400 [exp] 133 / 8e-33 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 129 / 2e-31 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 127 / 9e-31 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.003G146300 [exp] 127 / 1e-30 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.011G135300 [exp] 122 / 2e-29 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.001G419100 [exp] 121 / 4e-29 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.017G023200 [exp] 110 / 5e-25 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF12068 [flax] [poplar] PH_RBD Rab-binding domain (RBD) CL0266 [flax] [poplar] PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10006646 pacid=23158634 polypeptide=Lus10006646 locus=Lus10006646.g ID=Lus10006646.BGIv1.0 annot-version=v1.0 ATGTTAGAGACGGAGCTCCACGATTTGTCCGACGACGCTGATTACGCCGCCTCTATTCAGCAAGGATCAACGAGCATCATGTTGACGAGAAGTGAGAGCG GGAACAGAAGCATGTCCAGCGAACCGGAAGGTGCTGAGCTTATATATTTGAAAGATAATGTTACCATCCATCCGACGCAGTTCGCTTCTGAGAGAATCAG CGGAAGGTTGAAGCTGGTTAAGCACGGCTCTTCAGTGTTTATGACGTGGATCCCATACAAAGGACAAAGCTACAGTGCTAGGCTTTCTGACAAAGATAAG AGCCTGTACACAATCAGAGCTGTCCCTTTCTCGGATGTGCGATCAATTCGTCGACACACCCCAACGTTTGGGTGGCAGTACATAATTATTGTTTTGTCCA CAGGACTTGCATTTCCTCCTCTTTATTTCTATAATGGAGGAGTAAAGGAGTTCTTTGCTACACTGAAGCAACATGTTCTGATTGTCAGGTCATTGGAAGA TGCAAATGTATTCCTTGTGAATGATTTTCAGAATCCACTGCAGAGAACTTTATCATCGTTGGAGATGCCAGGGGCAGTTTCAATAGGAAGCACAACAAGT ACGCCTGATTCAGGTGAACAATTGTCATCCTTGACAGATGGTGGTAAAAGTGGTGATGATATTGCTCAAAGAATCTTGAGGTACAAGCAGAAAGCTAATG ATCCTGGCCGTGATCTTTCTATCCATGTACTTGAAAAATTCTCTCTCGTGACCAAATTTGCTCGAGAAACAACAACACAGCTGTTCCGTGAAAATAGCAA TGGGTTTAGTGCTCTGGATACAAAAAACTATAGCCTCCCTGGGCATGATAGTCCTTACAAGGAAGAACAAGAAAAGAAGAAAGTTCCTGAAGAAATTCAT GTACCCGCAGATCCTCTGGAGTTTGATAAACTGGCACTTGTATGGGGAAAGCCGCGACAGTCTCCTTTGGGGTCTGAAGAGTGGGCCGCTTTCTTGGACT CGGAAGGGCGAATCATGGATTCGAAAGCTTTGAGAAAAAGGATATTTTATGGAGGAGTGGAGCACACAACACGCAAAGAGGTTTGGGCATTTTTACTGGG ATATCATGACTATGAATCAACTTATGCAGAGAGGGAAAACCTTAAGACGCTTAAGAGAACGGAGTATCTGACACTAAAGCAACAGTGGCAGAGTATCTCC TCTGAACAAGCCAAGAAATTTACAAAATTCAGGGAACGGAAGGGGCTGATAGACAAAGATGTGGTGCGGACTGATAGATCACTACCTTATTATGATGGAG ATAGTAACCCGAATGTGAAGATTCTACGTGATATCCTATTGACATATTCATTCTATAACTTTGATCTTGGATACTGTCAGGGCATGAGTGATCTACTGTC TCCGATTTTGTATGTAATGGAGGACGAATCAGAATCATTTTGGTGTCTTGACGCGGTGATGGAACGACTTGGGCGAAATTTTAACCGGGACCAAAATGGC ATGCACTCTCAACTGTTTGCACTTTCTAAGTTGGTAGAATTGTTAGACAGCCCATTGCACAACTATTTCCAGCAGAAAGATTGCTTGAATTACTTCTTTT GCTTCCGTTGGCTTCTGATACAGTTCAAGAGGGAGTTTGAATATGAGCAAATTATGTGCCTATGGGAGGTTCTATGGACACATCATCTGTCTGAACATCT GCACCTATACCTGTGTGTTGCGATCTTGAAGCGGTACCGCAGCAAAATTTTCGGGGAGCAGATGGATTTCGACACCTTGTTAAAGTTCATTAACGAGCTA AGCGGCCATATCGACCTGGATTCAATTCTTAGGGATGCGGAGGCTCTGTGCATATATGCTGGTGAGAATGGCGCTGCTTGCGTTCCACCAGGTACGCCTC CTTCACTACCTATCGAGAATGAGAATAGCATGCTCTATTCGCTGGAGGATGAAGTTCTGTAA
AA sequence Show only first row Show all	>Lus10006646 pacid=23158634 polypeptide=Lus10006646 locus=Lus10006646.g ID=Lus10006646.BGIv1.0 annot-version=v1.0 MLETELHDLSDDADYAASIQQGSTSIMLTRSESGNRSMSSEPEGAELIYLKDNVTIHPTQFASERISGRLKLVKHGSSVFMTWIPYKGQSYSARLSDKDK SLYTIRAVPFSDVRSIRRHTPTFGWQYIIIVLSTGLAFPPLYFYNGGVKEFFATLKQHVLIVRSLEDANVFLVNDFQNPLQRTLSSLEMPGAVSIGSTTS TPDSGEQLSSLTDGGKSGDDIAQRILRYKQKANDPGRDLSIHVLEKFSLVTKFARETTTQLFRENSNGFSALDTKNYSLPGHDSPYKEEQEKKKVPEEIH VPADPLEFDKLALVWGKPRQSPLGSEEWAAFLDSEGRIMDSKALRKRIFYGGVEHTTRKEVWAFLLGYHDYESTYAERENLKTLKRTEYLTLKQQWQSIS SEQAKKFTKFRERKGLIDKDVVRTDRSLPYYDGDSNPNVKILRDILLTYSFYNFDLGYCQGMSDLLSPILYVMEDESESFWCLDAVMERLGRNFNRDQNG MHSQLFALSKLVELLDSPLHNYFQQKDCLNYFFCFRWLLIQFKREFEYEQIMCLWEVLWTHHLSEHLHLYLCVAILKRYRSKIFGEQMDFDTLLKFINEL SGHIDLDSILRDAEALCIYAGENGAACVPPGTPPSLPIENENSMLYSLEDEVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52580			RabGAP/TBC domain-containing p...		Lus10006646 [exp]	0	1
AT2G14910			unknown protein		Lus10013888 [exp]	1.0	0.8748
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10036064 [exp]	3.0	0.8264
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10030232 [exp]	3.2	0.8574
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10019337 [exp]	6.2	0.7611
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10009614 [exp]	8.8	0.7862
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10038818 [exp]	8.8	0.7834
AT2G25605			unknown protein		Lus10008087 [exp]	9.5	0.8026
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10037222 [exp]	11.2	0.8150
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10014929 [exp]	13.0	0.7661
AT3G09010			Protein kinase superfamily pro...		Lus10002494 [exp]	20.4	0.7618

Compare expression of checked genes

Lus10006646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.