Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80490 1521 / 0 TPR1 TOPLESS-related 1 (.1.2) AT1G15750 1478 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G16830 1233 / 0 TPR2 TOPLESS-related 2 (.1) AT5G27030 1208 / 0 TPR3 TOPLESS-related 3 (.1.2) AT3G15880 1030 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT2G25420 251 / 8e-71 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 56 / 6e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 56 / 7e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G73720 56 / 2e-07 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT4G15900 55 / 2e-07 PRL1 pleiotropic regulatory locus 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038094 [exp] 1887 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10019401 [exp] 1816 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10043258 [exp] 1576 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10029876 [exp] 1196 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10020668 [exp] 1195 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10011481 [exp] 996 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011905 [exp] 977 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10023119 [exp] 946 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10001951 [exp] 641 / 0 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030000 [exp] 1473 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 1343 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.006G257900 [exp] 1238 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023900 [exp] 1234 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.006G066800 [exp] 1102 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.018G128000 [exp] 1096 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.018G023800 [exp] 1021 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2) Potri.013G081300 [exp] 920 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.005G021700 [exp] 833 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 819 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10006650 pacid=23158645 polypeptide=Lus10006650 locus=Lus10006650.g ID=Lus10006650.BGIv1.0 annot-version=v1.0 ATGTCTTCGCTCAGCAGGGAGCTTGTGTTTCTCATCCTTCAATTCCTGGACGAAGAGAAATTTAAGGAGTCTGTACAAAAATTGGAGCAGGAGTCAGGAT TTTACTTCAACATGCGGCATTTTGAGGATATGGTAACAAATGGGGAGTGGGAGGAGGTGGAGAAGTATTTATCCGGGTTCACTAAGGTTGATGATAACAG ATATTCCATGAAGATTTTCTTTGAGATCCGAAAGCAGAAGTATCTTGAGTCTTTGGACAAGAGAGATCGTGCCAAAGCTGTCGAAGTTTTGGTCAAAGAC TTGAAAGTGTTTGCAGCATTTAACGAGGAGCTGTTTAAGGAAATTACGCAGCTCTTGACATTAGAAAACTTCAGAGAAAACGAACAGCTTTCTAAGTATG GTGATACGAAATCTGCTAGGAATATCATGCTTGGAGAACTGAAGAAGTTGATAGAGGCTAATCCTTTGTTTCGTGACAAGCTTCAGGTCCCTACACTGAA AAATTCAAGATTGCGTACACTAATTAATCAAAGTTTAAATTGGCAGCATCAGCTGTGTAAGAATCCAAGGCCTAATCCTGATATAAAGACCTTATTCGTG GACCACAGCTGTGGTGGGCAGCCAAATGGTGCCCGAGCCCCATCCCCTGTCACCAATTCCTTAATGGGTGCAATGCCAAAGCAAGGAGGCTTCCCACCAC TTGGTGCTCATGGTCCGTTCCAAGCTGCACCTGGTACTTTGCCAACATCTCTTGCTGGTTGGATGGCAAATCCATCTGCTGTCCCCTATCCATCAGTTTC TGCTGGACCCATTAGCTTGGGTGGACCTAATAATGCAGCCATGTTGAAGCGTCCCCGGACCCCTCCTACGAACAACCCAGCTATGGATTATCAAACAGCA GATTCTGAGCATGTTTTAAAAAGATCAAGACAATTTGGGATGTCCGAAGAGGTTAATAATAATCTACCAGTAAATGTTCTGCCTGTCGCATATGCTGGCC ACAGCCATGGGCAGACTTCCTACTCATCTGATGATCTACCTAAGACTTCTGTTATGGCTTTAAATCAAGGCTCAGCAGTGAAGAGTATGGATTTTCATCC ATTGCAGCAGATACTACTTCTGGTTGGAACAAACATGGGTGATGTGATGGTATGGGAACTCGGTAGCCGTGAGAGAATTGCTTTAAAGAATTTTAAGGTT TGGGACCTTGGAGCTTGTTCCGGCGGGCTACAGGCATCTCTTGCTAATGACTATACAGCGTCAGTGAACCGCGTCATGTGGAGTCCGGATGGAACTCTAT TTGGTATTGCTTACTCTAAGCACATAGTTCATATCTATTCATACCATGGGGGTGATGATATAAGAAATCACCTTGAGATTGAAGCTCATGTTGGAAGTGT TAGTGATCTTGCTTTCTCGTATCCCAATAAGCAACTGTGCGTGGTCACTTGTGGAGAAGACAGAGTGATTAAGGTTTGGGATGCAGTTACTGGCAATAAG CAGTTCACTTTTGAAGGTCATGAAGCACCTGTATATTCAGTTTGCCCACATCACAAAGAAACTATTCAGTTTATATTTTCAACTGCAACTGACGGAAAGA TTAAAGCATGGTTGTATGATACCATGGGATCCAGAGTTGATTATGACGCCCCAGGACATTCATCAACCACTATGGCATATAGTGCTGATGGAACAAGATT GTTCTCATGCGGGACAAATAAGGATGGAGAATCACATTTGGTTGAATGGAATGAAAGTGAAGGTGCAGTTAAGCGGAGGTATACTGGTCTTGGAAAGCGA TCAGTTGGAGTTGTACAATTTGATACCACTAAGAACCGGATTTTAGCTGCTGGTGATGAGTTCATGCTCAAATTCTGGGACATGGACAATGCCCCTTCAA TGCCAAATTTTGCTGCTGCCAATCCGAATCCTGGGACTAGCAATGGGAATCCAGCTGCTCCTGTTCCACCCATGGTCGGAATGATTAGTGACAATCGAGC ATTGCCTGATGTCAAACCTAGAATTGCTGATGAATCAGGAGAGAAGTCTAGGATCTGGAAGGCAGCCGAAATAAATGAACCATCACAGTGTCGATCTCTG AGGCTTCTTGACAATTTGACTGCAATGAGGGTGGCCAGATTGATGTATACAAATTCTGGAATGGCAATATTAGCATTAGCATCTAATGCTGTTCATAAGC TCTGGAAATGGCAGAGAAACGATAGAAACGCTACTGGAAAGGCTACTGCTAGCGTAGCACCACAATTATGGCAACCATCTAGTGGGATAGTGATGACCAA TGATATGAGTGATAAGAACCCGGAAGATGCTGTTCCATGCTTTGCCCTATCGAAGAATGATTCTTATGTTATGTCAGCTTCAGGAGGAAAGATATCCCTT TTCAATATGATGACATTTAAGACCATGACAACATTCATGCCCCCACCACCAGCTGCAACATTCCTGGCATTTCACCCTCAAGACAATAACATCATTGCTA TAGGGATGGAGGATTCTTCTATCCAAATTTATAATGTCAGGGTTGATGAGGTTAAAACTAAGTTGAGCGGTCATCAGAAAAGAATCACTGGCCTCGCCTT CTCTAACACGCTAAATATACTCGTGTCTTCTGGAGCCGACTCACAGTTATGTGTGTGGAATACAGATGGATGGGAAAAGCAGGTTAGTAAGTTCTTGCAA ATTCCATCCGGACGTCCCACCTCTTCTATTTCGGATACCCGTGTTCAGTTTCATATCGATCAGACTCATCTGCTTGCGGTTCACGAGACACAAATAGCAC TATACGAAGCACCTAAACTAGAATGTCTCAAACAGTGGTTCCCCCGAGATGTGAATCCCATCACACATGCCACGTATTCATGTGATAGCCAATCGATATA TGTTGGTTTTGAAGATGGAAGTGTGGGTGTTCTTACAGCGCCATCTCTCAGACTGCGATGCAGAATAGGGTCCAATGCATACTTACCTCCTAACCCAAGC TTAAGGGTGTATCCCCTAGTAATTGCAGCGCACCCGTCGGAACCCAACCAATTCGCAATGGGATTAACGGATGGCGGAGTTCACGTGCTAGAGCCGTTAG AATCAGAAGGGAAATGGGGCACATCACCTCCAGTTGAGAATGGTGCTGGGCCTAGCAATTCAGGTGCAGCCGGTTCAGAACAACAACAAGCTCAAAGATA A
AA sequence Show only first row Show all	>Lus10006650 pacid=23158645 polypeptide=Lus10006650 locus=Lus10006650.g ID=Lus10006650.BGIv1.0 annot-version=v1.0 MSSLSRELVFLILQFLDEEKFKESVQKLEQESGFYFNMRHFEDMVTNGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLESLDKRDRAKAVEVLVKD LKVFAAFNEELFKEITQLLTLENFRENEQLSKYGDTKSARNIMLGELKKLIEANPLFRDKLQVPTLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFV DHSCGGQPNGARAPSPVTNSLMGAMPKQGGFPPLGAHGPFQAAPGTLPTSLAGWMANPSAVPYPSVSAGPISLGGPNNAAMLKRPRTPPTNNPAMDYQTA DSEHVLKRSRQFGMSEEVNNNLPVNVLPVAYAGHSHGQTSYSSDDLPKTSVMALNQGSAVKSMDFHPLQQILLLVGTNMGDVMVWELGSRERIALKNFKV WDLGACSGGLQASLANDYTASVNRVMWSPDGTLFGIAYSKHIVHIYSYHGGDDIRNHLEIEAHVGSVSDLAFSYPNKQLCVVTCGEDRVIKVWDAVTGNK QFTFEGHEAPVYSVCPHHKETIQFIFSTATDGKIKAWLYDTMGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKDGESHLVEWNESEGAVKRRYTGLGKR SVGVVQFDTTKNRILAAGDEFMLKFWDMDNAPSMPNFAAANPNPGTSNGNPAAPVPPMVGMISDNRALPDVKPRIADESGEKSRIWKAAEINEPSQCRSL RLLDNLTAMRVARLMYTNSGMAILALASNAVHKLWKWQRNDRNATGKATASVAPQLWQPSSGIVMTNDMSDKNPEDAVPCFALSKNDSYVMSASGGKISL FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLSGHQKRITGLAFSNTLNILVSSGADSQLCVWNTDGWEKQVSKFLQ IPSGRPTSSISDTRVQFHIDQTHLLAVHETQIALYEAPKLECLKQWFPRDVNPITHATYSCDSQSIYVGFEDGSVGVLTAPSLRLRCRIGSNAYLPPNPS LRVYPLVIAAHPSEPNQFAMGLTDGGVHVLEPLESEGKWGTSPPVENGAGPSNSGAAGSEQQQAQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	0	1
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10030713 [exp]	1.0	0.8739
AT1G09050			unknown protein		Lus10004495 [exp]	4.0	0.8383
AT3G58570			P-loop containing nucleoside t...		Lus10030075 [exp]	4.2	0.8272
AT5G60760			P-loop containing nucleoside t...		Lus10016116 [exp]	4.6	0.8268
AT1G14180			RING/U-box superfamily protein...		Lus10002316 [exp]	5.3	0.7884
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10040200 [exp]	7.1	0.8364
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10042690 [exp]	8.3	0.8494
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10011357 [exp]	11.9	0.7592
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10019401 [exp]	14.7	0.8496
AT1G29370			Kinase-related protein of unkn...		Lus10007339 [exp]	15.2	0.8178

Compare expression of checked genes

Lus10006650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.