Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42160 644 / 0 BRIZ1 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) AT2G26000 389 / 3e-131 BRIZ2 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) AT2G27160 66 / 5e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038095 [exp] 937 / 0 AT2G42160 684 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) Lus10035023 [exp] 374 / 4e-125 AT2G26000 631 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Lus10021683 [exp] 316 / 8e-103 AT2G26000 565 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G128100 [exp] 694 / 0 AT2G42160 621 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) Potri.005G110500 [exp] 445 / 3e-153 AT2G26000 605 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.007G063900 [exp] 421 / 1e-143 AT2G26000 600 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.009G090100 [exp] 41 / 0.0005 AT2G14830 193 / 3e-64 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF02148 [flax] [poplar] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein CL0221 [flax] [poplar] RRM PF07576 [flax] [poplar] BRAP2 BRCA1-associated protein 2
Representative CDS sequence Show only first row Show all	>Lus10006651 pacid=23158636 polypeptide=Lus10006651 locus=Lus10006651.g ID=Lus10006651.BGIv1.0 annot-version=v1.0 ATGTTCATCCTCCGCGTTCACTCCGTCGACGCAAACCATCCTCTCCATCTCGAGGAGAACCCCTTCTCCGTCGTCTCCTCCGCCGCTAACCCTACCCCGT ACCCTAAGTACAGCGAAAGGAGAGGCGTCGTTCATCTTTATCGAAGCGCATCACGCAGTTCTTTGCCGAACTCTACCTCTCGCTCCACGTCTCTCTTCGT TGTCGCCGCCCCCAACTACTTGTCCGCCGACGATTTTGTCCGCTTCTGCGAGTCTCACATCGAAAATGTGCTCGAGCTCGTCTTCATCAGAAATGATGGG ATGGAGGATCGGTATAGTGTGTTGATCAATCTTGATTCCCAGTCGGCAGCTGATATATTCTATAATAACTTCAATGGAAAGCGGTTCTCGCCGGCTGAGG CAGAGGTATGCCATATCCTGTTCGTATTGTCAGTCGACTACACTGAGTCCGCTGAAGAGGCCAGCACTCCTCCAACCGGGTTCACAGAGTTGCCTACTTG TCCAATATGCCTTGAGAGATTGGACCCCGACACTAGTGGAATACTCAGTACTCTCTGTGATCATTCATTCCAATGTTCTTGCACTTCGAAGTGGACGTAT TTGTCTTGTCAGGTTTGCAGACTTTGTCAGCAGGAGGATGAGAAACCAACTTGTGCTGCATGCGGGACATTGGAAAATATGTGGGTTTGCCTGCTGTGTG GCTTTGTGGGTTGTGGAAGATATAAAGAAGGGCACGCTATAAGGCATTGGCAATATACAGAGCATCGTTACTCTCTTGATTTGAGGACACAGCAAATCTG GGACTACGTTGGTGATAACTATGTCCATCGTCTAAACCAGTCAAAAGCTTATGACAAGTCCATTGATGTGAATGCCAACTGTAGATCAATGGAAGGAGAT TGTGGAACCTGCGAGTGTAGTGAGGATTCTGGATTTGGTGGTGCTCTTTATAGCAGCAAAGTTGAAGCAATTGTAGATGAATATAACCGTCTCCTTGCAA CACAGATGGAGACTCAAAGACAGTACTACGAATCTCTAATTACAGAAGCCAAAAGTAAACAAGAAACGTCAATCTCAGAAGGATTAGAGGAGGCTTTGAA ATCAACAATACAGGACCTCCAAAATAAATTGGATAAGTGTGAACTGGAAAAGAATGCAGTGGCAGAAACTAACAAAGGTCTCATAAAGGATGAACAAACT TGGCGTAAAAAGGCTAAAGATATAGAAGAAAGGGAAGCTTCATCATTAAGGAGCAAGGATGAGATGATACTTGATCTAGAAGAACAGATCCGAGATCTAA CAGTTTACATGGAAGCACAGAAGACGTTGAAGAAGATGACGGATCCAAGTGATATCCGGGAAGGGACATTGTTGGCCGTGCCTTTGAAGGAATCATCTCC AGCTAAAACCAAAAGGAATGCAAAGTTGAGCAAAAGACGACATTAA
AA sequence Show only first row Show all	>Lus10006651 pacid=23158636 polypeptide=Lus10006651 locus=Lus10006651.g ID=Lus10006651.BGIv1.0 annot-version=v1.0 MFILRVHSVDANHPLHLEENPFSVVSSAANPTPYPKYSERRGVVHLYRSASRSSLPNSTSRSTSLFVVAAPNYLSADDFVRFCESHIENVLELVFIRNDG MEDRYSVLINLDSQSAADIFYNNFNGKRFSPAEAEVCHILFVLSVDYTESAEEASTPPTGFTELPTCPICLERLDPDTSGILSTLCDHSFQCSCTSKWTY LSCQVCRLCQQEDEKPTCAACGTLENMWVCLLCGFVGCGRYKEGHAIRHWQYTEHRYSLDLRTQQIWDYVGDNYVHRLNQSKAYDKSIDVNANCRSMEGD CGTCECSEDSGFGGALYSSKVEAIVDEYNRLLATQMETQRQYYESLITEAKSKQETSISEGLEEALKSTIQDLQNKLDKCELEKNAVAETNKGLIKDEQT WRKKAKDIEEREASSLRSKDEMILDLEEQIRDLTVYMEAQKTLKKMTDPSDIREGTLLAVPLKESSPAKTKRNAKLSKRRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	0	1
AT2G20210			RNI-like superfamily protein (...		Lus10011909 [exp]	1.0	0.9310
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018126 [exp]	2.8	0.8966
AT5G28850			Calcium-binding EF-hand family...		Lus10011811 [exp]	3.0	0.8931
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	4.2	0.8792
AT5G55600			agenet domain-containing prote...		Lus10007115 [exp]	4.9	0.8911
AT1G07480			Transcription factor IIA, alph...		Lus10001563 [exp]	5.3	0.8836
AT3G61960			Protein kinase superfamily pro...		Lus10005135 [exp]	5.5	0.8847
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10024026 [exp]	5.5	0.8748
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006029 [exp]	5.9	0.8868
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10011940 [exp]	6.0	0.8634

Compare expression of checked genes

Lus10006651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.