Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G33520 587 / 0 SUF3, ESD1, ATARP6 SUPPRESSOR OF FRI 3, EARLY IN SHORT DAYS 1, actin-related protein 6 (.1) AT3G53750 166 / 5e-47 ACT3 actin 3 (.1) AT2G37620 166 / 5e-47 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT3G18780 165 / 7e-47 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT3G12110 165 / 7e-47 ACT11 actin-11 (.1) AT1G49240 165 / 8e-47 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT2G42090 164 / 2e-46 ACT9 actin 9 (.1) AT5G09810 159 / 1e-44 ACT2/7, ACT7 actin 7 (.1) AT2G42100 159 / 2e-44 Actin-like ATPase superfamily protein (.1) AT3G46520 159 / 2e-44 ACT12 actin-12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001694 [exp] 163 / 8e-46 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005163 [exp] 163 / 8e-46 AT3G12110 766 / 0.0 actin-11 (.1) Lus10006784 [exp] 163 / 1e-45 AT5G09810 769 / 0.0 actin 7 (.1) Lus10016259 [exp] 162 / 1e-45 AT3G46520 767 / 0.0 actin-12 (.1) Lus10016558 [exp] 162 / 1e-45 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 162 / 1e-45 AT3G12110 768 / 0.0 actin-11 (.1) Lus10005457 [exp] 162 / 1e-45 AT3G12110 768 / 0.0 actin-11 (.1) Lus10029286 [exp] 162 / 1e-45 AT3G46520 768 / 0.0 actin-12 (.1) Lus10005819 [exp] 160 / 5e-45 AT5G09810 778 / 0.0 actin 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G128300 [exp] 676 / 0 AT3G33520 649 / 0.0 SUPPRESSOR OF FRI 3, EARLY IN SHORT DAYS 1, actin-related protein 6 (.1) Potri.016G045500 [exp] 164 / 3e-46 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 164 / 3e-46 AT3G12110 767 / 0.0 actin-11 (.1) Potri.010G204300 [exp] 163 / 6e-46 AT3G12110 733 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 163 / 7e-46 AT3G12110 765 / 0.0 actin-11 (.1) Potri.019G010400 [exp] 160 / 5e-45 AT5G09810 774 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 160 / 5e-45 AT5G09810 775 / 0.0 actin 7 (.1) Potri.001G453600 [exp] 159 / 2e-44 AT5G09810 769 / 0.0 actin 7 (.1) Potri.006G139900 [exp] 155 / 7e-43 AT5G09810 554 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 154 / 2e-42 AT5G09810 731 / 0.0 actin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin
Representative CDS sequence Show only first row Show all	>Lus10006654 pacid=23158628 polypeptide=Lus10006654 locus=Lus10006654.g ID=Lus10006654.BGIv1.0 annot-version=v1.0 ATGTCGAACATCGTCGTCCTGGACAACGGCGGCGGCCTGATAAAAGCAGGGCACGCCGGCGACCTCGATCCCACCACCGTAATCCCAAACTGCCTTTACC GTCCACTCTCCTCCAAGAAATTCATCCACCCTTCTCCCCTAACCCTCTCCTCCGCCACCACCGAAGACTTAACCTCCGCCGCCGTCCGCCGCCCAATCGA CCGCGGGTACCTGATAAACCCGGACCTTCAACGCGACATATGGAGCCATCTCTTCTCGTCCTTACGAATATCCCCTCCCAATTCCTCCCTCCTTTTAACC GAACCTCTCTTCTCCCTCCCTTCAATCCAGCGATCCACCGACGAGCTCGTATTCGAGGATTTCGGGTTCTCGTCTCTCCACGTGGCCGACCCGGCGAAGC TCGTCCACTTGTACGAGGCGAGTCGGAGGCCGCACGGTCTGGTGTCGAAAGCGCAGTGTAGCCTAGTGGTTGATTGTGGATTCTCTTTCACTCATGCTGT TCCGGTTTATCAAAATGTTTCGCTAGGGTACGCTGCGAAGAGGATTGATTTGGGTGGGAAGGCTTTGACGAATTACTTGAAGGAGCTGGTTTCTTATCGA TCGGTGAATGTAATGGATCAGAGCTTTATCATTGATGATGTGAAGGAAAGGCTTTGCTTCGTTTCGCTTGATGTTTCTCGCGATTTGCAGATTGCCAGGA GGAGAGGGAAGAACAATCTGTTTAGGTGTAGTTACGTTTTGCCTGATGGGATAACACACACCAAAGGATTTGTTAAAGATCCAGAAGAGGCTAATAGATA CCTCACTTTAACTGATGATGGAGCTTCAGCTCTGACAAAGAATGAAGCCGATCATGATCCTGCAGAGAGGAAGAAAACCGATTTGACCAAAAACGAATTT GACTTGACAAACGAGCGGTTCCTTGTTCCAGAGATGCTCTTCCATCCTGTAGATTTGGGTTTGAATCAAGCTGGACTTGCAGAGTGCATTGTTCGAGCTA TCAACTCATGCAGTCCTCTTCTTCATCCTGTGCTATATGAGAGCATTATATTAACTGGTGGAAGCACGCTATTTCCTCGATTCGCCGAGAGACTGGAGCT AGAGCTGCGGCCGCTTGTTCCTGAGGACTATCAAGTGAAGATAATTACACAAGAAGATCCTCTACTGGGCGTATGGAGAGGTGGATCACTTCTAGCTTCA AGTCCCGATTTTGAAGGAATGTGTATCACCAAGGCCGAGTATGAAGAACTTGGCTCCAGTAGATGTCGGATGAAATTCTCCTATGGAAAGGCCGCAAGTC AATAA
AA sequence Show only first row Show all	>Lus10006654 pacid=23158628 polypeptide=Lus10006654 locus=Lus10006654.g ID=Lus10006654.BGIv1.0 annot-version=v1.0 MSNIVVLDNGGGLIKAGHAGDLDPTTVIPNCLYRPLSSKKFIHPSPLTLSSATTEDLTSAAVRRPIDRGYLINPDLQRDIWSHLFSSLRISPPNSSLLLT EPLFSLPSIQRSTDELVFEDFGFSSLHVADPAKLVHLYEASRRPHGLVSKAQCSLVVDCGFSFTHAVPVYQNVSLGYAAKRIDLGGKALTNYLKELVSYR SVNVMDQSFIIDDVKERLCFVSLDVSRDLQIARRRGKNNLFRCSYVLPDGITHTKGFVKDPEEANRYLTLTDDGASALTKNEADHDPAERKKTDLTKNEF DLTNERFLVPEMLFHPVDLGLNQAGLAECIVRAINSCSPLLHPVLYESIILTGGSTLFPRFAERLELELRPLVPEDYQVKIITQEDPLLGVWRGGSLLAS SPDFEGMCITKAEYEELGSSRCRMKFSYGKAASQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G33520		SUF3, ESD1, ATA...	SUPPRESSOR OF FRI 3, EARLY IN ...		Lus10006654 [exp]	0	1
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10041365 [exp]	2.0	0.8420
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10025108 [exp]	6.7	0.7963
AT1G77500			Protein of unknown function (D...		Lus10042723 [exp]	8.4	0.8123
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10038892 [exp]	11.6	0.7811
AT5G48480			Lactoylglutathione lyase / gly...		Lus10020400 [exp]	12.5	0.7599
					Lus10006631 [exp]	24.3	0.7197
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10011693 [exp]	26.7	0.7762
AT1G21740			Protein of unknown function (D...		Lus10042722 [exp]	33.2	0.7416
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Lus10009967 [exp]	38.2	0.6617
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10025872 [exp]	38.5	0.7190

Compare expression of checked genes

Lus10006654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.