Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G33530 924 / 0 Transducin family protein / WD-40 repeat family protein (.1.2.3) AT2G26610 831 / 0 Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019403 [exp] 1746 / 0 AT3G33530 1732 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10038096 [exp] 1296 / 0 AT3G33530 1721 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10043261 [exp] 1034 / 0 AT3G33530 1707 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G128400 [exp] 1597 / 0 AT3G33530 1613 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006655 pacid=23158642 polypeptide=Lus10006655 locus=Lus10006655.g ID=Lus10006655.BGIv1.0 annot-version=v1.0 ATGTCTCTCGCCGGGTCGCCACCGCTTCCCGCGGCGGACTCCTCCTCCTCCCCGTGGGAATGCATGCTCCCGGGCCCTCCTTCACGTAACAACTTCGGCT CCGTCGACATTTCCCCTTCCGGCCTCCTCGCTTTTCCTACCGGATCCTCAATCTCCGTCATCGACTCCTGCTCTCTCCAGCACATCTCAACCATCCCTCT CCCCGCTCCACTATCTCCTTCGTCCTCTTCGTCCGCCTCCGTCGCTCTCTCCCCCTTTGTGACCTCTGTCCGGTGGACTCCCCTCCCTCTAAGCCGCGAT CTCCTTGTCACCGAGCCTTCCTCATCTCACTTAATCCTCGCTGCCGGAGACCGCCACGGCCGGGTTGGTCTAGTCGATTTCCGCCACAGATCAGTGCTCC TCTGGCTCGATTCGGATTTGAGCTCCAAATGTGGAATCCAGGACCTCTGCTGGGTCCTTTGTCGGCCCGACTCGTATGTTCTCGCGGCCATCTCAGGTCC TTCTACTCTCTCCTTATACAACACCAGTTCGGGTCATTGTTTCTTCAAGTATGACGCCACTCCTGAGTTCCTTTCTTGTATACGTCGTGATCCTTTTGAT CCTCGACATTTTTGCGCGATCGGTCTCAAAGGATTTCTGTTGTCGATCAAATTGCTCGGAGAGGCGGATGATGAGGTTGTGGTGAAGGAACTTCGAATTC CTACTGACTGTACCGAGTTTCTGAAGCTCGAGAGAGATCCCGTGGGAGGATCTTCATCCTCCGCGCCTGCATCGGCCGCCTTTCCTCGATACTCCGTGAA GATGACCTTTTCGCCGCAGTGCAATCACATTCTGTTGGTGACGTTCCCTAGGGAGCTGGTGGTGTTCGATTTGCAGTATGAGACTACTCTTTTCAATTCT TTACTGCCTAGAGGATGCCCCAAGTTTCTGAATGTGTTGACGGATCCGAATAGCGACTTCTTGTATTGTGCGCATTTGGATGGGAAGCTCAGCGTTTGGA GACGAAAAGAAGGAGAGCAGGTCCACATACTGTGTGTGATGGAAGAGTTAATGCCCTCAATTGGAAGTTCTATTCCTTCTCCTGCATTACTTGCTATAGC CATCTCTCCATCAGAGTCCACTCTCCAGAATGTCGTCAAGTTATATCGGGATGCACCTGATACTCCCTCGTCCGAGGATTTTAACAATCATTTTGATTTC TATGATGAGTCCCTTCTTCTATCTAAGACACACATGATATCAATTTCTGATGATGGCAAACTAAGTAATTGGCTTTTAACTGCCGAAGAGAGAGTAGAAA AGGAAGTCGATGTTATCCCATATGCGGGAGATGATGCCAACTCTGTAGTGTCTACTGATGGTAAAAATCTGGAAAGAAACAAGCAACAGGAAAATGCGAA TGACAGTAAAGGTCGGTTGTCATCCGTCTCCTGTGACGATCATGCAACAGTCAAGATATGCTTGGTTGGACAGCTGCAGCTTCTTTCTTCAGCTTTAACT ATGCTCGCGGTGCCATCTCCTTCTCTAACTGCTACTTTAGCTCGTGGTGGCAATTATCCTGCTGTAGCAGTTCCGCTTGTTGCTTTAGGAACTCAGACTG GAATGATTGACATTGTTGATGTCTCTGCCAATGCTGTAGCAGCAAGTTTTTCTGTTCATACAAGCTCAGTCCGTGGTCTGCGATGGCTTGGGAACTCTAG ATTGGTTTCATTTTCTTATAATCAGCTTAGATCATTAGCTCTTCCATTCACAGTGCTGGAATGGACTCTTCCAACTGTTCCAAAGCCAGTCCAGAATGGT CCTTCTAGGCAATCTTCATTTAACGATGGTACACCTAAAGCATCCGATGGACCACCCACCCCCAATTTGTCAGAATCTACTGTGAGTTCAGATACATCTC AAGACGAGGCTGCAGAAAGCTTTGCATTTGCACTTGTTAATGGAGCACTCGGAGTTTTCGAGGTTCATGGGCGAAAGATTCGAGATTTTAGACCAAAATG GCCTTCTTCTTCATTTGTTGCATCTGATGGACTAATCACAGCAATGGCCTACCGTTTGCCTCACGTGGTAATGGGGGACAGAACGGGAAATATAAGGTGG TGGGATGTAACAACTGGGTCTTCTTCATCATTTAACACTCACCGAGAGGGGATTAGGAGGATTAAGTTCTCACCTGTAGTTCCTCGAGACGAGAGTAGAG GACGAGTTGCTGTCCTTTTCTATGACAACACCTTCTCTGTATTTGATCTTGATTCACCAGACCCATTAGCAAATTCCCTTTTGCAGCCTCAATTTCCTGG AACTCTTGTATTGGAGCTCGATTGGTTGCCCCTGAGAACCGAAAAACATGACCCATTGGTATTGTGTATTGCTGGGGCTGATGGTAGTTACCGCCTTCTT GAAGTTAACATGAATGATAAAAGACATGGCTTTAGACCTCCACAGTCAATTAAGGAGAGATTCCGCCCAGTGCCTATTTGCTGTCCCATATTGCTGCCTA CTCCCCATGCTCTAGCTTTGCGTATGATCTTGCAACTGGGTGTGAAGCCTTCATGGTTTAATACTTCTAGTACGGCCATTGATAGAAGGCCAAACTCAAT TCCTGGGGCTTCTTCGTCAGAAGGGGACTTTCGTAGTTACATGATCGATCTACCATCTATTGGTGATTCTGTTGTGCCAGAAATGCTCCTTAAAGTCTTA GAACCATACCGCAAAGAAGGCTGTATACTGGACGATGAAGTAGCAAAATTGTATGCAACAGTGGTCAACAAAGGTTGTGCTGTAAGGTTTGCATTTGCAG CTGCCATTTTTGGTGAAACCGCAGAAGCACTCTTCTGGCTGCAATTGCCTCGTGCTTTAAAGCATTTGATGAGCAAATTGGTTGGTAAAGCTCCATTAAA GTCGGCTATATCAGCAACAGCGGCAGAGTTGGAAGGTGCAGTTATGCTAACCAGAATTACCTCGAGGGAAAAGGCATTGGCTAACATGGAGAGTGTAGAC TCGAGTCACGGTTTGCTAAGATTAATGGCTTTCCAGCAAGAAGAGTTATGGGAGAGTGCCAATGAGCGAATTCCTTGGCATGAGAAACTCGAGGGAGAAG CAGCTATCCAGAATCAAGTGCATGAGCTTATTACCGTTGGGAACTTAGAAACAGCAGTTAGTTTGTTGCTTTCGACTCCTGCGGAGAGTTCCTTCTTCTA CCCAAATGCTTTACGTGCAGTGGCTCTTTCTTCTGCTGTGTCTAACTCTCTCCTCGAACTTGCAGTCAAGGTCGTGGCAGCCAATATGGTCAGGACAGAC AGATCACTCGCTGCTACTCATCTACTTTGTGCGGTAGGAAGGCATCAAGAAGCATGTTCTCAGCTACAAGATGCTGGGTGTTGGACTGATGCTGCAACTC TCGCAGCTACACATTTGAAAGGATCAGATTATGCAAGAGTGCTGCAGAGGTGGGCAGGCCATGTTCTTCACACTGAGCACAACGTTTGGAGGGCTCTTAT TTTGTACGTTGCAGCCGGTGGTTTGCCAGAGGCCCTGGCAGCACTCCGTGAGGCGCAACAACCAGATACAGCAGCAATGTTCATCCTTGCTTGCCGTGAA ATCCATAGTGAGATCCTGCTGTCGAATACAGAGGATGAAGCTGGAGGCAAGGATCCATGGGCAAACTTGGCTGGATTAGACCCAGAGAACGAAGATGTGA TGGTTGTGGGCGAATATTTCGGGCAGTACCAAAGAAAACTGGTGCATCTCTGCATGGATTCACAGCCGTATTACGACTGA
AA sequence Show only first row Show all	>Lus10006655 pacid=23158642 polypeptide=Lus10006655 locus=Lus10006655.g ID=Lus10006655.BGIv1.0 annot-version=v1.0 MSLAGSPPLPAADSSSSPWECMLPGPPSRNNFGSVDISPSGLLAFPTGSSISVIDSCSLQHISTIPLPAPLSPSSSSSASVALSPFVTSVRWTPLPLSRD LLVTEPSSSHLILAAGDRHGRVGLVDFRHRSVLLWLDSDLSSKCGIQDLCWVLCRPDSYVLAAISGPSTLSLYNTSSGHCFFKYDATPEFLSCIRRDPFD PRHFCAIGLKGFLLSIKLLGEADDEVVVKELRIPTDCTEFLKLERDPVGGSSSSAPASAAFPRYSVKMTFSPQCNHILLVTFPRELVVFDLQYETTLFNS LLPRGCPKFLNVLTDPNSDFLYCAHLDGKLSVWRRKEGEQVHILCVMEELMPSIGSSIPSPALLAIAISPSESTLQNVVKLYRDAPDTPSSEDFNNHFDF YDESLLLSKTHMISISDDGKLSNWLLTAEERVEKEVDVIPYAGDDANSVVSTDGKNLERNKQQENANDSKGRLSSVSCDDHATVKICLVGQLQLLSSALT MLAVPSPSLTATLARGGNYPAVAVPLVALGTQTGMIDIVDVSANAVAASFSVHTSSVRGLRWLGNSRLVSFSYNQLRSLALPFTVLEWTLPTVPKPVQNG PSRQSSFNDGTPKASDGPPTPNLSESTVSSDTSQDEAAESFAFALVNGALGVFEVHGRKIRDFRPKWPSSSFVASDGLITAMAYRLPHVVMGDRTGNIRW WDVTTGSSSSFNTHREGIRRIKFSPVVPRDESRGRVAVLFYDNTFSVFDLDSPDPLANSLLQPQFPGTLVLELDWLPLRTEKHDPLVLCIAGADGSYRLL EVNMNDKRHGFRPPQSIKERFRPVPICCPILLPTPHALALRMILQLGVKPSWFNTSSTAIDRRPNSIPGASSSEGDFRSYMIDLPSIGDSVVPEMLLKVL EPYRKEGCILDDEVAKLYATVVNKGCAVRFAFAAAIFGETAEALFWLQLPRALKHLMSKLVGKAPLKSAISATAAELEGAVMLTRITSREKALANMESVD SSHGLLRLMAFQQEELWESANERIPWHEKLEGEAAIQNQVHELITVGNLETAVSLLLSTPAESSFFYPNALRAVALSSAVSNSLLELAVKVVAANMVRTD RSLAATHLLCAVGRHQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWAGHVLHTEHNVWRALILYVAAGGLPEALAALREAQQPDTAAMFILACRE IHSEILLSNTEDEAGGKDPWANLAGLDPENEDVMVVGEYFGQYQRKLVHLCMDSQPYYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26610			Transducin family protein / WD...		Lus10006655 [exp]	0	1
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10026613 [exp]	5.5	0.8323
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10018769 [exp]	6.9	0.8484
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013369 [exp]	9.7	0.8394
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005322 [exp]	14.0	0.7620
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10026923 [exp]	18.3	0.8237
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10042409 [exp]	20.5	0.8204
AT4G39050			Kinesin motor family protein (...		Lus10041958 [exp]	21.5	0.8047
AT4G39050			Kinesin motor family protein (...		Lus10017969 [exp]	22.5	0.8233
AT3G19740			P-loop containing nucleoside t...		Lus10040976 [exp]	33.0	0.8146
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10004217 [exp]	38.8	0.7779

Compare expression of checked genes

Lus10006655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.