Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15810 114 / 9e-32 Protein of unknown function (DUF567) (.1) AT1G80120 101 / 5e-27 Protein of unknown function (DUF567) (.1) AT5G41590 47 / 2e-06 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038097 [exp] 238 / 3e-80 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10007118 [exp] 107 / 1e-29 AT3G15810 191 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10016666 [exp] 106 / 1e-28 AT3G15810 265 / 5e-90 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 93 / 2e-23 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10028756 [exp] 53 / 1e-08 AT5G41590 194 / 7e-62 Protein of unknown function (DUF567) (.1) Lus10017526 [exp] 52 / 4e-08 AT5G41590 194 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10010681 [exp] 40 / 0.0003 AT2G38640 184 / 6e-59 Protein of unknown function (DUF567) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G067000 [exp] 128 / 1e-37 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1) Potri.001G192000 [exp] 118 / 1e-33 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 110 / 8e-31 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.003G133200 [exp] 56 / 6e-10 AT5G41590 207 / 1e-67 Protein of unknown function (DUF567) (.1) Potri.001G098400 [exp] 56 / 7e-10 AT5G41590 201 / 3e-65 Protein of unknown function (DUF567) (.1) Potri.006G113800 [exp] 45 / 8e-06 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1) Potri.016G143500 [exp] 45 / 8e-06 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 41 / 0.0002 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10006656 pacid=23158633 polypeptide=Lus10006656 locus=Lus10006656.g ID=Lus10006656.BGIv1.0 annot-version=v1.0 ATGGACGCTTCCGGAAAATGCCTTCTCACCCTCCTTCGCAAGAAGAAGTCTCCACAACAGGTGGGAAGCTTCCTCGGCGAGAGAATCCAAAGCCCAACCC ACGTCGGCATCGCGGAGGATCAAGGAGCCAGCCCTGGCGGCGGTGGGTCCATCTTCACGGTGTTCAAATCAAGCATAATCGGGCAGTCGTCTTTGATCGT GGAGCTCTACGGCACTGATCCTCGAGGAGGCGAGGAGTACCTGATCGAGGGCTCTTACGTCGACAGATCATGCACCGTTTATTACACCCCTGTCCTCCAA AGCTCCTCGCCGTCCAAGGAAGCTGTTGCTGAGATCAACCGTAAAGTGGACCCCACCACTCACGTGATGCTTAGCCGTGACGTGTTCTTGCTGTGTCTGA AGCCTGGCTTTGACGGCGCCTTCGCCATGGGATTGGTCCTGATCCTTGACCAGCTGTTTGATGATCAAGTGGTTGACGGCGACGATGTTGATGGTTTTGA TCCTGAAGGTGCGCCCTAG
AA sequence Show only first row Show all	>Lus10006656 pacid=23158633 polypeptide=Lus10006656 locus=Lus10006656.g ID=Lus10006656.BGIv1.0 annot-version=v1.0 MDASGKCLLTLLRKKKSPQQVGSFLGERIQSPTHVGIAEDQGASPGGGGSIFTVFKSSIIGQSSLIVELYGTDPRGGEEYLIEGSYVDRSCTVYYTPVLQ SSSPSKEAVAEINRKVDPTTHVMLSRDVFLLCLKPGFDGAFAMGLVLILDQLFDDQVVDGDDVDGFDPEGAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15810			Protein of unknown function (D...		Lus10006656 [exp]	0	1
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10024706 [exp]	1.0	0.8449
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10004439 [exp]	1.4	0.7465
AT5G17680			disease resistance protein (TI...		Lus10012852 [exp]	2.8	0.7343
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10010220 [exp]	3.5	0.7260
AT5G09360		LAC14	laccase 14 (.1)		Lus10026812 [exp]	12.1	0.7406
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	16.1	0.7326
AT1G54830	CCAAT	NF-YC3	"nuclear factor Y, subunit C3"...		Lus10008013 [exp]	19.0	0.5491
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020333 [exp]	23.5	0.7054
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	23.5	0.7108
AT3G19940			Major facilitator superfamily ...		Lus10040991 [exp]	24.8	0.6770

Compare expression of checked genes

Lus10006656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.