Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26600 435 / 3e-155 Glycosyl hydrolase superfamily protein (.1.2) AT3G15800 382 / 1e-132 Glycosyl hydrolase superfamily protein (.1) AT1G32860 277 / 4e-91 Glycosyl hydrolase superfamily protein (.1) AT2G27500 265 / 9e-88 Glycosyl hydrolase superfamily protein (.1.2.3) AT5G42100 259 / 3e-84 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT4G18340 246 / 3e-79 Glycosyl hydrolase superfamily protein (.1) AT5G42720 246 / 7e-79 Glycosyl hydrolase family 17 protein (.1) AT1G30080 243 / 3e-78 Glycosyl hydrolase superfamily protein (.1) AT2G16230 246 / 4e-78 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 234 / 1e-73 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038099 [exp] 581 / 0 AT2G26600 547 / 0.0 Glycosyl hydrolase superfamily protein (.1.2) Lus10023120 [exp] 384 / 5e-135 AT3G15800 409 / 1e-143 Glycosyl hydrolase superfamily protein (.1) Lus10011482 [exp] 389 / 7e-135 AT3G15800 540 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10001660 [exp] 265 / 3e-87 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10008277 [exp] 266 / 7e-87 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1) Lus10017344 [exp] 265 / 9e-87 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10033244 [exp] 266 / 1e-86 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10004869 [exp] 265 / 1e-86 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10028122 [exp] 264 / 2e-86 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G129500 [exp] 469 / 7e-167 AT2G26600 543 / 0.0 Glycosyl hydrolase superfamily protein (.1.2) Potri.006G067500 [exp] 462 / 1e-163 AT2G26600 561 / 0.0 Glycosyl hydrolase superfamily protein (.1.2) Potri.001G192200 [exp] 405 / 4e-141 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.003G032600 [exp] 401 / 3e-140 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 280 / 2e-92 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.011G152400 [exp] 280 / 2e-92 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.011G084900 [exp] 269 / 3e-88 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.009G163700 [exp] 266 / 2e-87 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G097400 [exp] 265 / 1e-86 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G202400 [exp] 257 / 9e-84 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10006659 pacid=23158637 polypeptide=Lus10006659 locus=Lus10006659.g ID=Lus10006659.BGIv1.0 annot-version=v1.0 ATGAGCAGTAATGCAAGCAATGCTATGAGTTGGGTTAAAGAAAATGTTGAGCAATTCATGCCTAACTCGGATATTTGTGGCATCGCTATCGGGAATGAAG TTTTAGGAGGAGGTGATATTGAACTATATGGAGCCCTTCTTGGTGCCGCCAAAAACATTCATAGTGCTCTAGATAAGCTGGGTTTATCCGACACAGTTCA AATTTCAACTGCTCATTCACAAGCCGTGTTCTCTAATTCGTATCCACCTTCTTCGTGTGTATTTCGGGAGAACATTGCTCAGTATATGAAGCCACTGATG CAGTTCTTCTGGGAAACGGGGTCACCATTCTGCTTGAATGTGTATCCATTCCTGGCATACATGAGTGATCCGGAGAACATTGATATTAATTATGCTCTCT TTCAGAAAACTAAGGGGATTTATGATCCCAAAACTGATTTGCACTACGATAACATGCTTGATGCTCAGATAGATGCGACCTATGCTGCTTTGGAGGATGC TGGGTTTGACAAGATGGAAGTCATAGTTACCGAGACTGGTTGGGCTTCTCGTGGTGACAATAACGAAGCTGCTGCTACGGTTGAGAATGCTAGGACCTAC AACTTTAACTTGCGTAAAAGACTAGCGAAGAAGAAAGGTACACCAATGAGGCCAAAGAATATTGTCAAGGCGTATGTTTTCGCTATATTCAACGAGAATT TGAAGCCTGGACCGACGTCTGAGAGGAATTTCGGACTTTTCAAGCCTGATGGAAGCATTTCGTATGATGTTGGGTATAAGGGTCTGAAATCTTCATCAGC TGATTCAATAGTTTTGTCATTAAAGGTAATAGATGTTCATGTTCCTGCCTGTTTACATCAATATGAATGGCCATATGATCGAATTATTTGTTGCTTGCCT GCCTAG
AA sequence Show only first row Show all	>Lus10006659 pacid=23158637 polypeptide=Lus10006659 locus=Lus10006659.g ID=Lus10006659.BGIv1.0 annot-version=v1.0 MSSNASNAMSWVKENVEQFMPNSDICGIAIGNEVLGGGDIELYGALLGAAKNIHSALDKLGLSDTVQISTAHSQAVFSNSYPPSSCVFRENIAQYMKPLM QFFWETGSPFCLNVYPFLAYMSDPENIDINYALFQKTKGIYDPKTDLHYDNMLDAQIDATYAALEDAGFDKMEVIVTETGWASRGDNNEAAATVENARTY NFNLRKRLAKKKGTPMRPKNIVKAYVFAIFNENLKPGPTSERNFGLFKPDGSISYDVGYKGLKSSSADSIVLSLKVIDVHVPACLHQYEWPYDRIICCLP A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26600			Glycosyl hydrolase superfamily...		Lus10006659 [exp]	0	1
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10032605 [exp]	1.0	0.8706
AT3G49055			unknown protein		Lus10039244 [exp]	3.6	0.8027
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	4.6	0.8558
AT4G20330			Transcription initiation facto...		Lus10029563 [exp]	5.8	0.8627
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10034140 [exp]	10.0	0.8481
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10003295 [exp]	11.7	0.8154
AT4G22590		TPPG	trehalose-6-phosphate phosphat...		Lus10024607 [exp]	13.4	0.7938
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10018909 [exp]	15.0	0.8107
AT5G42470			unknown protein		Lus10034533 [exp]	15.7	0.7652
AT1G76200			unknown protein		Lus10012279 [exp]	15.9	0.8182

Compare expression of checked genes

Lus10006659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.