Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25280 144 / 7e-43 serine-rich protein-related (.1.2) AT5G11090 140 / 1e-41 serine-rich protein-related (.1) AT5G20370 70 / 7e-15 serine-rich protein-related (.1) AT1G24577 44 / 2e-06 unknown protein AT1G67910 44 / 5e-06 unknown protein AT3G13227 41 / 8e-05 serine-rich protein-related (.1) AT3G56500 39 / 0.0007 serine-rich protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038100 [exp] 315 / 8e-110 AT5G25280 145 / 4e-43 serine-rich protein-related (.1.2) Lus10039998 [exp] 247 / 2e-83 AT5G25280 157 / 3e-48 serine-rich protein-related (.1.2) Lus10008808 [exp] 246 / 9e-83 AT5G25280 153 / 2e-46 serine-rich protein-related (.1.2) Lus10001946 [exp] 154 / 7e-47 AT5G11090 179 / 9e-57 serine-rich protein-related (.1) Lus10001928 [exp] 144 / 6e-43 AT5G11090 177 / 3e-56 serine-rich protein-related (.1) Lus10008811 [exp] 62 / 2e-12 AT5G11090 61 / 2e-12 serine-rich protein-related (.1) Lus10038101 [exp] 52 / 3e-08 AT5G11090 54 / 2e-09 serine-rich protein-related (.1) Lus10034901 [exp] 47 / 4e-07 AT1G67910 49 / 6e-09 unknown protein Lus10023632 [exp] 44 / 4e-06 AT1G67910 48 / 1e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060800 [exp] 171 / 9e-54 AT5G25280 130 / 2e-37 serine-rich protein-related (.1.2) Potri.018G120400 [exp] 169 / 7e-53 AT5G11090 126 / 3e-36 serine-rich protein-related (.1) Potri.018G023300 [exp] 167 / 4e-52 AT5G11090 194 / 1e-62 serine-rich protein-related (.1) Potri.006G258600 [exp] 154 / 3e-47 AT5G25280 181 / 1e-57 serine-rich protein-related (.1.2) Potri.006G060700 [exp] 68 / 7e-15 AT5G11090 66 / 4e-14 serine-rich protein-related (.1) Potri.018G120300 [exp] 64 / 4e-13 AT5G11090 67 / 1e-14 serine-rich protein-related (.1) Potri.002G250700 [exp] 44 / 1e-05 AT3G56500 43 / 5e-06 serine-rich protein-related (.1) Potri.011G123600 [exp] 43 / 2e-05 AT3G15518 64 / 2e-14 unknown protein Potri.018G079200 [exp] 42 / 3e-05 AT1G67910 45 / 9e-08 unknown protein Potri.001G404500 [exp] 41 / 9e-05 AT3G15518 66 / 2e-15 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006660 pacid=23158646 polypeptide=Lus10006660 locus=Lus10006660.g ID=Lus10006660.BGIv1.0 annot-version=v1.0 ATGGCGGTTACAACTGGCCAAACCTCCAGGCGCTCCACCGTCGGCAGCAATGGCGGCGGGTCAATAAACCACCGCTCATACAGCTCTCAGTCCGGCAGAT TCAGCCTCTCATCCTACAATCAATCCTCTCCGTCCTCCTCTTCCACCGGGTTCGCATCATCCAGCACCAGTTTTGCTTCTCGCTCGTCTACTTTCCTTGC GGGGAACAACATCAGATCTGCGTCCCCTCCACGCGTCAGCCTCTACGGCGGCCCTACTATGTCAGCCTCCGCCGTCTGTTTCTCTCTGGACCGCTCTGTC TCTCCGAATCGGTCAATTTCGACGGTGAGTCCATCCAGGAGTCGTCCGCAGGTTGTGAGGAAGCAGCCAGTTCCAAAGAAGACGTGTATGTGCTCGCCTA CGACACATCCTGGATCGTTCCGGTGTAGCCTCCACAAGAATCAGAGCAGCAGAAGCGGTCACCACTCGTCGCCGAACAACCGCCTCAACGCTCGCAGATC TGCGATGACGAACTCGCTAGTGAGGATAGCTGGCGTGGAAGGAGGCGATTTGGTGAAGCGAGCGCTTGCGGCGTTGATCCGTCCTTCATCCCATCAGCAG AGGCGGAGAACGGCGTTCCAACCGCGTCCAAGCCGACTCAGTGTCATGTCTATGGCGGTTGAGTCTTAA
AA sequence Show only first row Show all	>Lus10006660 pacid=23158646 polypeptide=Lus10006660 locus=Lus10006660.g ID=Lus10006660.BGIv1.0 annot-version=v1.0 MAVTTGQTSRRSTVGSNGGGSINHRSYSSQSGRFSLSSYNQSSPSSSSTGFASSSTSFASRSSTFLAGNNIRSASPPRVSLYGGPTMSASAVCFSLDRSV SPNRSISTVSPSRSRPQVVRKQPVPKKTCMCSPTTHPGSFRCSLHKNQSSRSGHHSSPNNRLNARRSAMTNSLVRIAGVEGGDLVKRALAALIRPSSHQQ RRRTAFQPRPSRLSVMSMAVES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25280			serine-rich protein-related (....		Lus10006660 [exp]	0	1
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	7.1	0.7416
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Lus10007818 [exp]	15.9	0.7109
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Lus10022594 [exp]	16.9	0.6008
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10040662 [exp]	17.9	0.7104
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	18.0	0.7215
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10040079 [exp]	25.8	0.6916
AT3G59080			Eukaryotic aspartyl protease f...		Lus10020759 [exp]	28.2	0.6972
AT3G15760			unknown protein		Lus10043269 [exp]	28.6	0.7119
AT4G31130			Protein of unknown function (D...		Lus10030038 [exp]	30.2	0.6644
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	33.2	0.6829

Compare expression of checked genes

Lus10006660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.