Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12420 483 / 3e-170 ACR8 ACT domain repeat 8 (.1) AT4G22780 449 / 8e-157 ACR7 ACT domain repeat 7 (.1) AT2G03730 332 / 1e-110 ACR5 ACT domain repeat 5 (.1.2) AT1G76990 286 / 5e-93 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G69040 274 / 3e-88 ACR4 ACT domain repeat 4 (.1.2) AT3G01990 239 / 8e-75 ACR6 ACT domain repeat 6 (.1) AT5G25320 191 / 7e-56 ACT-like superfamily protein (.1) AT5G65890 154 / 2e-42 ACR1 ACT domain repeat 1 (.1.2) AT2G36840 50 / 1e-06 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1) AT2G39570 48 / 9e-06 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036827 [exp] 319 / 5e-106 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10019191 [exp] 268 / 7e-88 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 263 / 1e-83 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10003136 [exp] 260 / 7e-83 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10007004 [exp] 258 / 3e-81 AT1G12420 288 / 2e-92 ACT domain repeat 8 (.1) Lus10041543 [exp] 248 / 3e-78 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10012550 [exp] 245 / 6e-77 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10028646 [exp] 235 / 3e-73 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 238 / 6e-72 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G115600 [exp] 603 / 0 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.003G116600 [exp] 595 / 0 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1) Potri.T124144 [exp] 365 / 8e-124 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 365 / 4e-123 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.001G060100 [exp] 328 / 2e-109 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.002G074800 [exp] 323 / 2e-107 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.005G185600 [exp] 321 / 2e-106 AT1G76990 709 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.012G102200 [exp] 310 / 4e-102 AT1G69040 473 / 5e-165 ACT domain repeat 4 (.1.2) Potri.012G083000 [exp] 307 / 3e-101 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.010G138600 [exp] 281 / 3e-91 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10006662 pacid=23152189 polypeptide=Lus10006662 locus=Lus10006662.g ID=Lus10006662.BGIv1.0 annot-version=v1.0 ATGGAGTGGAGTGCTTGTCTAGATGAGTATGAGAAGCTCGTTATCCGTATGACCACTCCCAGAGTGGTCATAGATAATGCCGTTTGCCCTTCCACCACAG TCGTCAAAGTTGACAGCGGGAGAAAACACGGCATTTTGCTTGAAGCAGTTCAGGTGCTCACAGATCTGAACCTCTCCATTAAAAAAGCTTACATTTCCTC CGACGGAAGATGGTTCATGGACGTTTTCCATGTGACCGATCTGAATGGGAAGAAGCTAACCGACGAGAGCGTGATCAACTACATTGAACAGAGTTTGGGG ACGGTTGATTATGGTCGGACCAACGATTTCAGCGAATCAGGGTGCCCGATTGAGGACTTGAAGCAGATCGAGCGGATCGAGGCCCGGTTGAGGAATGTGC TCAAGGGGGATAATGATGATGTGAGTAGTGTGATCAAGACTTGTGTGTCGGCTTCGATGGGTGTTACGCATACGGAGAGGAGGCTTCATCAGATGATGTT TGCGGATAGGGATTATGAATTGGCGAGGAGTGGTTCGAATTTGCCTGTCGTTACGGTGCAGAACTGGGTTGAGAGAGGGTACTCGGTCGTGAATGTTCAA GCGAAGGATCGGAGGAAGCTTCTGTTTGATGTTGTGTGCACTTTGACTGATATGGAGTACATTGTGTTCCATGCCACGGTCAACACGGTTGGAGATATGG GTTATTTGGAATTCTACATTAGGCATCAAGACGGGACTCCGATTAGCTCGGAAGCCGAGAGGCAACGGGTGATTCTGTGTCTACAAGCTGCTGTCGAGAG AAGGGCATCCGAGGGTGTGAGGTTGGAGTTGTGCATGTCGGACAGGCAAGGGCTACTCGCTGATGTGACAAGAACGTTCCGCGAGAACGGTCTGAACGTG ACGAGGGCAGAGATATCAACGATGATGAACGGGATGGTGGAGAACGTGTTCTACGTGACGGATGCGAGGGGGAACCCTGCGGATTCCAAGATAATTGAAT CGGTACGATTTAAGGTTGGGGAAGGTAGCTTGAGGGTGAAGGAATTGCCACCACTTGTGTACCACAAGGAGGCAGAGAGGGATGAGGATGCAGTTCATGG GGTGGCTGGGACAGTGTTGCTCTCATTGGGGAGCATAGTGAGGAAGAATCTTTACAATTTGGGGCTCATTAGATCATACTCATGA
AA sequence Show only first row Show all	>Lus10006662 pacid=23152189 polypeptide=Lus10006662 locus=Lus10006662.g ID=Lus10006662.BGIv1.0 annot-version=v1.0 MEWSACLDEYEKLVIRMTTPRVVIDNAVCPSTTVVKVDSGRKHGILLEAVQVLTDLNLSIKKAYISSDGRWFMDVFHVTDLNGKKLTDESVINYIEQSLG TVDYGRTNDFSESGCPIEDLKQIERIEARLRNVLKGDNDDVSSVIKTCVSASMGVTHTERRLHQMMFADRDYELARSGSNLPVVTVQNWVERGYSVVNVQ AKDRRKLLFDVVCTLTDMEYIVFHATVNTVGDMGYLEFYIRHQDGTPISSEAERQRVILCLQAAVERRASEGVRLELCMSDRQGLLADVTRTFRENGLNV TRAEISTMMNGMVENVFYVTDARGNPADSKIIESVRFKVGEGSLRVKELPPLVYHKEAERDEDAVHGVAGTVLLSLGSIVRKNLYNLGLIRSYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22780		ACR7	ACT domain repeat 7 (.1)		Lus10006662 [exp]	0	1
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015570 [exp]	2.2	0.9184
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10000275 [exp]	3.5	0.8841
AT2G25270			unknown protein		Lus10038102 [exp]	3.5	0.8993
AT5G42660			Protein of unknown function (D...		Lus10024684 [exp]	5.5	0.8654
					Lus10023370 [exp]	5.7	0.8938
AT4G16490			ARM repeat superfamily protein...		Lus10039047 [exp]	5.9	0.8677
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10038226 [exp]	7.4	0.8855
AT4G16490			ARM repeat superfamily protein...		Lus10038812 [exp]	7.4	0.8617
AT2G36210			SAUR-like auxin-responsive pro...		Lus10017018 [exp]	8.4	0.8174
AT2G19580		TET2	tetraspanin2 (.1)		Lus10008563 [exp]	11.7	0.8978

Compare expression of checked genes

Lus10006662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.