Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12060 178 / 9e-56 Double Clp-N motif protein (.1) AT4G25370 160 / 1e-48 Double Clp-N motif protein (.1) AT5G50920 60 / 2e-10 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 59 / 9e-10 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT3G45450 45 / 2e-05 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007005 [exp] 382 / 3e-136 AT4G12060 181 / 5e-57 Double Clp-N motif protein (.1) Lus10031694 [exp] 144 / 2e-42 AT4G12060 186 / 3e-59 Double Clp-N motif protein (.1) Lus10031116 [exp] 141 / 1e-41 AT4G12060 176 / 4e-55 Double Clp-N motif protein (.1) Lus10036017 [exp] 64 / 2e-11 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 62 / 6e-11 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032543 [exp] 60 / 9e-11 AT5G50920 265 / 9e-83 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043198 [exp] 60 / 1e-10 AT5G50920 266 / 3e-83 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G115500 [exp] 223 / 3e-73 AT4G12060 226 / 2e-74 Double Clp-N motif protein (.1) Potri.015G131700 [exp] 172 / 1e-53 AT4G25370 243 / 1e-81 Double Clp-N motif protein (.1) Potri.012G129800 [exp] 171 / 6e-53 AT4G25370 248 / 2e-83 Double Clp-N motif protein (.1) Potri.012G105900 [exp] 59 / 4e-10 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 59 / 4e-10 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [flax] [poplar] Clp_N Clp amino terminal domain, pathogenicity island component
Representative CDS sequence Show only first row Show all	>Lus10006663 pacid=23152179 polypeptide=Lus10006663 locus=Lus10006663.g ID=Lus10006663.BGIv1.0 annot-version=v1.0 ATGGAAGGAGCAGCTCAATCTCTACCTACCAATCTTCAAACAGTCCACAAACCCAATCTACAAACACAAAAGCTTCAATCTCCACAATCCCTTAAACCTT ACACCCTGCAAAACTCTTCATTTTCACGCATTTCCTACTCAATCTCCATAACCTCTTGCCGCCGCCGCTCTCTTCTCCAGCCAATCCCCGCTACCGTACT CCCAACTGCGAATCCGGAGAGGCTTGTATCTACTGAGAAAGTTCCCCAGTGGTCGGTGATGGCGATAAAGGCGTTTGCACAGGCTTCATTGCAGGCTAGG AAGCTGAAGCATCCTCAAACTGGGACTGATTCTCTTCTATTGGGTGTCTTGATTGAAGGAACTGGTGCTGCTGCGAAGTATCTGTGGGAGAATGGTATAA CAGTGTTCAGGACGCGGGACGTGATCAGTAAGTTACTCGGAGATGCTGATGTTTTCACTGCTGTCCCCGGAGAGTCTCCTCCCTTGACTGAAGATGCTCA AAGGGCAATTGATTGGGCTGTTGACCATAAAATGAAATCTGGTAGCGGCGGCGGCAAAGAAGTAACAACGATCGATATGATTCTTGGCATTTGGTCAGAT GCCGATTCACCGGGCCACAAAGTATTGGCCGCAATGGGTTTCAACGACGAGAAAGTGAAAGAACTGGAATCTAGAAATTCCGGACCTGGGATGACTGAGG CATGA
AA sequence Show only first row Show all	>Lus10006663 pacid=23152179 polypeptide=Lus10006663 locus=Lus10006663.g ID=Lus10006663.BGIv1.0 annot-version=v1.0 MEGAAQSLPTNLQTVHKPNLQTQKLQSPQSLKPYTLQNSSFSRISYSISITSCRRRSLLQPIPATVLPTANPERLVSTEKVPQWSVMAIKAFAQASLQAR KLKHPQTGTDSLLLGVLIEGTGAAAKYLWENGITVFRTRDVISKLLGDADVFTAVPGESPPLTEDAQRAIDWAVDHKMKSGSGGGKEVTTIDMILGIWSD ADSPGHKVLAAMGFNDEKVKELESRNSGPGMTEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12060			Double Clp-N motif protein (.1...		Lus10006663 [exp]	0	1
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	8.5	0.9179
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10005668 [exp]	11.1	0.9124
AT4G26370			antitermination NusB domain-co...		Lus10013400 [exp]	11.6	0.9100
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	14.7	0.9070
AT4G20130		PTAC14	plastid transcriptionally acti...		Lus10006942 [exp]	15.0	0.9013
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	22.6	0.9012
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001425 [exp]	25.5	0.9005
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10010317 [exp]	26.5	0.8903
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	27.7	0.8998
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	31.0	0.8971

Compare expression of checked genes

Lus10006663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.