Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45430 132 / 2e-37 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT4G12050 132 / 3e-37 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G22810 129 / 2e-36 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G42940 114 / 6e-31 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G17800 114 / 8e-31 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT3G60870 112 / 4e-30 AT-hook AHL18 AT-hook motif nuclear-localized protein 18 (.1) AT2G35270 111 / 9e-30 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT4G14465 110 / 2e-29 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT3G04570 102 / 4e-26 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1) AT1G76500 96 / 6e-24 AT-hook SOB3, AHL29 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020763 [exp] 120 / 4e-33 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10015862 [exp] 113 / 3e-30 AT3G60870 227 / 1e-73 AT-hook motif nuclear-localized protein 18 (.1) Lus10006577 [exp] 112 / 4e-30 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10000519 [exp] 112 / 1e-29 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10002711 [exp] 112 / 1e-29 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10009301 [exp] 110 / 6e-29 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1) Lus10031460 [exp] 103 / 1e-27 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10031458 [exp] 97 / 5e-25 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1) Lus10042551 [exp] 93 / 1e-22 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116900 [exp] 152 / 3e-45 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1) Potri.001G115200 [exp] 152 / 4e-45 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1) Potri.002G149300 [exp] 136 / 4e-39 AT2G45430 226 / 1e-72 AT-hook motif nuclear-localized protein 22 (.1) Potri.014G070800 [exp] 134 / 3e-38 AT2G45430 222 / 5e-71 AT-hook motif nuclear-localized protein 22 (.1) Potri.008G164466 [exp] 121 / 1e-34 AT4G14465 184 / 3e-58 AT-hook motif nuclear-localized protein 20 (.1) Potri.010G074201 [exp] 121 / 2e-33 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.005G202700 [exp] 119 / 4e-33 AT2G42940 305 / 3e-105 Predicted AT-hook DNA-binding family protein (.1) Potri.001G142800 [exp] 117 / 4e-32 AT4G17800 300 / 6e-102 Predicted AT-hook DNA-binding family protein (.1) Potri.002G059400 [exp] 116 / 1e-31 AT2G42940 311 / 2e-107 Predicted AT-hook DNA-binding family protein (.1) Potri.010G200100 [exp] 116 / 3e-31 AT3G55560 209 / 2e-65 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10006664 pacid=23152222 polypeptide=Lus10006664 locus=Lus10006664.g ID=Lus10006664.BGIv1.0 annot-version=v1.0 ATGGAGGTCGCCGACGGATGCGACATCGTTGATTCCGTCGCCACCTTCGCCCGACGCCGCCAGCGCGGCGTCTGCATCATGAGCGGGACCGGGACGGTCA CCAACGTCACCCTCCGTCAACCAGCTTCTCCCGGAGCCGTGGTCACCCTCCACGGCCGATTCGAGATCTTATCCCTAGCGGGTTCCTTCCTCCCACCGCC AGCTCCTCCTGCTGCCACCGGACTGACGATCTACCTCGCCGGAGGGCAAGGGCAAGTCGTAGGAGGAAGCGTGGTGGGCACGCTGACCGCTTCCGGTCCC GTAGTCATCATGGCGGCTTCTTTCAGCAATGCGGCGTACGAGCGGCTGCCGTTGGAAGAGGAGGAGCCGCCACAGATGGCAGCGGCCGGTCAAGGCGGGA TCGGCTCTCCGGGAGGAGGCGTGGGGTCCACCACCCCAAGTCAACAGCAGCAGCAGGTCATGGGTGGTAGTGGAACCGGGTCGGGGGACCCGAATGGAGC TCCGCTTTTCCACGGTTTGCCTCCCAACTTGCTGAATTCCATCCAATTGCCCGCGGATGCTTACTGGGGCGGCGGAAACGGCAGCGGCGGAGGCGGCGGT GGAGGACGTGCTCCTTACTGA
AA sequence Show only first row Show all	>Lus10006664 pacid=23152222 polypeptide=Lus10006664 locus=Lus10006664.g ID=Lus10006664.BGIv1.0 annot-version=v1.0 MEVADGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGTLTASGP VVIMAASFSNAAYERLPLEEEEPPQMAAAGQGGIGSPGGGVGSTTPSQQQQQVMGGSGTGSGDPNGAPLFHGLPPNLLNSIQLPADAYWGGGNGSGGGGG GGRAPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	0	1
AT4G33590			unknown protein		Lus10041131 [exp]	1.4	0.9745
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	1.7	0.9791
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10007007 [exp]	3.5	0.9682
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021045 [exp]	3.7	0.9627
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	3.9	0.9715
AT3G55230			Disease resistance-responsive ...		Lus10030318 [exp]	5.0	0.9645
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10018575 [exp]	5.5	0.9631
AT3G49950	GRAS		GRAS family transcription fact...		Lus10014852 [exp]	5.8	0.9448
AT1G02460			Pectin lyase-like superfamily ...		Lus10009994 [exp]	6.6	0.9420
AT5G56040			Leucine-rich receptor-like pro...		Lus10018094 [exp]	6.6	0.9528

Compare expression of checked genes

Lus10006664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.