Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007012 [exp] 109 / 1e-28 ND / Lus10007009 [exp] 77 / 1e-16 ND / Lus10042300 [exp] 67 / 4e-13 ND 35 / 0.008 Lus10026358 [exp] 60 / 2e-10 ND 42 / 6e-05 Lus10028788 [exp] 55 / 9e-09 ND / Lus10042299 [exp] 44 / 2e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114701 [exp] 47 / 3e-06 ND / Potri.009G114800 [exp] 43 / 4e-05 ND / Potri.004G153200 [exp] 41 / 7e-05 AT1G49310 48 / 2e-08 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10950 [flax] [poplar] Organ_specific Organ specific protein
Representative CDS sequence Show only first row Show all	>Lus10006666 pacid=23152197 polypeptide=Lus10006666 locus=Lus10006666.g ID=Lus10006666.BGIv1.0 annot-version=v1.0 ATGGCGCCATCTCGTTTGCCTTTGATCACTATCTTCCTACTCGTACTGTTGGGAGCTGGTTGTGCCAATGCAAGGAAAGACCCAGCAGGATATTACTGGG AGATTGTGACGGATGATCAGCCTATTCCGAAAGAGATCGAATCGCTAGTCCCTGTTGCAAACTCTGATGTTCACCACGATGTCAGAGATTACTGGAGAAT TGTGACGAATGATCAGCCTATGCCGAAAGCCATCCAATCTCTAGTCCCTGTTGCAGACTCTGTTCACGAGGGTGTTGGTTGTGATACCGATGATCATCAC AAATCCAAAAGGATTGAGTCGTCGTCACAACCTCATCATCAGTTAGTTGATGGTCTACCGTCCGATAAGTTTGCCAAAGGAATCGAGTCCCCGGAGCTTG TTCAATACGTTGTCCATGCCAAGGCCGATGATCACAAGTTTTCCAAGGGGATCCGGTCAGAGCCTCAATACGTTGTGTACGACAAGGCCGATGATCACAA GTTTGCCAAGGGGATCCGGTCCGAGCCTCAATACGTTGTGTACGACAAGGCCGATGATCACAAGTTTGCCAAGGGGATCCAGTCGGAGCCTCAATACGTT GTCTACGACAAGGCCGATGATCTCCCGTCCAACTAG
AA sequence Show only first row Show all	>Lus10006666 pacid=23152197 polypeptide=Lus10006666 locus=Lus10006666.g ID=Lus10006666.BGIv1.0 annot-version=v1.0 MAPSRLPLITIFLLVLLGAGCANARKDPAGYYWEIVTDDQPIPKEIESLVPVANSDVHHDVRDYWRIVTNDQPMPKAIQSLVPVADSVHEGVGCDTDDHH KSKRIESSSQPHHQLVDGLPSDKFAKGIESPELVQYVVHAKADDHKFSKGIRSEPQYVVYDKADDHKFAKGIRSEPQYVVYDKADDHKFAKGIQSEPQYV VYDKADDLPSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006666 [exp]	0	1
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10034663 [exp]	9.9	0.8126
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006665 [exp]	12.6	0.7828
					Lus10004941 [exp]	13.9	0.7236
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10034370 [exp]	14.4	0.8088
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10018522 [exp]	15.9	0.8078
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10005080 [exp]	20.1	0.8071
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10013999 [exp]	23.4	0.7435
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10022427 [exp]	24.6	0.8060
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10004637 [exp]	24.7	0.8050
AT5G44150			unknown protein		Lus10011074 [exp]	25.1	0.6458

Compare expression of checked genes

Lus10006666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.