Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49320 192 / 7e-60 ATUSPL1 unknown seed protein like 1 (.1) AT5G25610 158 / 2e-45 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G70370 119 / 1e-29 PG2 polygalacturonase 2 (.1.2) AT1G60390 117 / 2e-29 PG1 polygalacturonase 1 (.1) AT1G23760 115 / 2e-28 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007011 [exp] 465 / 1e-166 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1) Lus10006665 [exp] 401 / 1e-140 AT1G49320 177 / 3e-53 unknown seed protein like 1 (.1) Lus10032324 [exp] 372 / 2e-130 AT1G49320 184 / 4e-57 unknown seed protein like 1 (.1) Lus10026333 [exp] 332 / 4e-115 AT1G49320 187 / 9e-59 unknown seed protein like 1 (.1) Lus10040475 [exp] 214 / 1e-68 AT1G49320 191 / 7e-60 unknown seed protein like 1 (.1) Lus10042335 [exp] 211 / 4e-67 AT1G49320 184 / 6e-57 unknown seed protein like 1 (.1) Lus10007674 [exp] 165 / 1e-47 AT5G25610 353 / 2e-119 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10003263 [exp] 162 / 1e-47 AT5G25610 266 / 7e-87 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10022114 [exp] 163 / 6e-47 AT5G25610 357 / 5e-121 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114600 [exp] 271 / 1e-90 AT1G49320 220 / 5e-71 unknown seed protein like 1 (.1) Potri.004G153100 [exp] 238 / 3e-77 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1) Potri.009G114300 [exp] 236 / 1e-76 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1) Potri.018G036700 [exp] 171 / 6e-50 AT5G25610 307 / 2e-101 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243700 [exp] 169 / 8e-50 AT5G25610 319 / 4e-107 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243600 [exp] 169 / 2e-49 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012500 [exp] 158 / 1e-45 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012700 [exp] 154 / 2e-44 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136000 [exp] 146 / 1e-41 AT5G25610 211 / 3e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136900 [exp] 146 / 1e-41 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [flax] [poplar] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Lus10006667 pacid=23152207 polypeptide=Lus10006667 locus=Lus10006667.g ID=Lus10006667.BGIv1.0 annot-version=v1.0 ATGATGGGTAAAGAAACCTCCCTCAAGGTCTTGGGTCTACTCTTCTCCCTCCTTGTGCTCCATTTGGTGGTGGCAGTAGATGGAGGAAGAGACTTAGCAT CAAACAATGTTCCTCAGCATCAGCATCAGCATCATATGATGATGAGCCCAGGCTCAAAAGTGTTCTTCAGGTTGAAAGACCTGAAACAAGGATCCCAAAT GGAAATCTACTTCCCAAACAAAGAAGACCAATCGAAATCCCCGCATTTCCTCGCCAGAGAAGAAGCAGATTCGATCCCCTTCTCCTCCCAACACCTCCCT TACCTTCTCAATCTCTTCTCCTACAAGCCGGGCTCCACAGAGGCCTCTGCCGTGGTGGAGGCACTGTCGAGCTGCGAGAGCAGCTCGATCGAGGGAGAGA CCAAGTTCTGCGCCACTTCCTTGGAATCGATGCTCGATTTCGCACAACAGACACTCGGCCCGCAGCATCAGCTCAAGGTCCTGAGCACCACCCACTTGAT AAGAACTGCAGCAGCCCTTGAATCTGATGGTATTCATCGATCACCTAATTCTTCTTTCTTGTGTTTCACGTTTGGTGGGAGTGGTCTGCGCGGAGCCCAA CTTGTGCAGAACTACACAATTGTTGGTGAGCCAGAGGAGGTGAAGGCTAAAAGGCAGGTGGCATGTCACACCATGCCATACCCATATGCTATTTTCTATT GCCATAGCCAGGTGACTGAGAACAGAGTTTTCATGGTTTCATTGACAAGCACTGGCAACGGAGACAGAGTTGATGCTCTTGCAATGTGTCACATGGACAC TTCTCAGTGGTTCGAAGGACACGTCTCGTTTAAGGTTCTTGGAGTTAAGCCTGGGGAGACTGAGGTCTGCCATTTCTTCCCTGAAGATCATCTCGTTTAC GTCCCGATCCACAACCATGTGGCTGCTTAA
AA sequence Show only first row Show all	>Lus10006667 pacid=23152207 polypeptide=Lus10006667 locus=Lus10006667.g ID=Lus10006667.BGIv1.0 annot-version=v1.0 MMGKETSLKVLGLLFSLLVLHLVVAVDGGRDLASNNVPQHQHQHHMMMSPGSKVFFRLKDLKQGSQMEIYFPNKEDQSKSPHFLAREEADSIPFSSQHLP YLLNLFSYKPGSTEASAVVEALSSCESSSIEGETKFCATSLESMLDFAQQTLGPQHQLKVLSTTHLIRTAAALESDGIHRSPNSSFLCFTFGGSGLRGAQ LVQNYTIVGEPEEVKAKRQVACHTMPYPYAIFYCHSQVTENRVFMVSLTSTGNGDRVDALAMCHMDTSQWFEGHVSFKVLGVKPGETEVCHFFPEDHLVY VPIHNHVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006667 [exp]	0	1
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	3.5	0.9530
AT5G01790			unknown protein		Lus10029060 [exp]	3.9	0.9119
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10013326 [exp]	4.2	0.9112
AT2G37130			Peroxidase superfamily protein...		Lus10015074 [exp]	4.5	0.9389
AT5G23760			Copper transport protein famil...		Lus10001485 [exp]	6.2	0.9093
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029319 [exp]	6.9	0.9335
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	8.7	0.9370
AT1G60420			DC1 domain-containing protein ...		Lus10013017 [exp]	10.6	0.9228
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Lus10037895 [exp]	11.6	0.9212
AT4G35160			O-methyltransferase family pro...		Lus10023986 [exp]	13.0	0.9042

Compare expression of checked genes

Lus10006667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.