Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32030 123 / 2e-35 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT3G22560 115 / 2e-32 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G32020 112 / 3e-31 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032323 [exp] 264 / 2e-90 AT2G32030 107 / 6e-29 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10039343 [exp] 216 / 1e-71 AT3G22560 151 / 1e-46 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10010569 [exp] 199 / 3e-65 AT3G22560 144 / 7e-44 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10007013 [exp] 209 / 2e-64 AT5G64300 506 / 4e-174 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10024705 [exp] 157 / 2e-49 AT2G32030 58 / 2e-11 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10021914 [exp] 137 / 5e-41 AT3G22560 216 / 2e-72 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10010570 [exp] 128 / 2e-37 AT2G32030 220 / 7e-74 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10039344 [exp] 114 / 3e-32 AT2G32030 236 / 4e-80 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10041199 [exp] 87 / 5e-22 AT3G22560 128 / 7e-39 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G154700 [exp] 158 / 3e-49 AT3G22560 177 / 3e-57 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.008G154800 [exp] 135 / 1e-40 AT3G22560 225 / 3e-76 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.010G085600 [exp] 128 / 1e-37 AT2G32030 223 / 6e-75 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.007G102900 [exp] 80 / 6e-19 AT3G22560 96 / 9e-26 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006668 pacid=23152202 polypeptide=Lus10006668 locus=Lus10006668.g ID=Lus10006668.BGIv1.0 annot-version=v1.0 ATGGCCAAGAAGAACAGCCACAACAACATTTCCTCAAGGATAACCGTTCGGCCGTTCAGATTATCAGACGCCGACGACATGTGGAGCTACGTGACCAATC CAGAGATGTCACGTTACACCCCGGTGCCGTGGAAGGAGGGCATGTTCAAGTCAAAGCAAGATGTGGAGTCCTACATACAGCATTTCTGCATCCCACACCG ATACTGCCGGTCGGTGTGCATAGACGGCCGGTCCATCGGGATGATGATCATCACACCTACAAACCCCGGATCGTGGAGGAAGGGGAACTTCGGAGGGCTA CTGACGCCCGAGTACTGGGCAAAGGGGGTTGGCACTAGAGCTGCGGAGATTGCTATGGTGGACGCGTTTCGAGCTATACCGGAGATGGTGAGGCTAGAGG CGTATGGAGATGTGGAGAACAAAGGGGTGCCTAAGACTTTGGAAAGGATTGGGTTTCAAAGGGAAGGTGTGTTGAGGAAGTTCATGTTTCACAGAGGTAA AGATAGGGATGTTGTTTTGTATAGTATGTTGGTTGATGATGAAAAACGTCTTGCTTTGGTTCAAATGCTCAGCACCACTACCATGTCAAGGCTTTGA
AA sequence Show only first row Show all	>Lus10006668 pacid=23152202 polypeptide=Lus10006668 locus=Lus10006668.g ID=Lus10006668.BGIv1.0 annot-version=v1.0 MAKKNSHNNISSRITVRPFRLSDADDMWSYVTNPEMSRYTPVPWKEGMFKSKQDVESYIQHFCIPHRYCRSVCIDGRSIGMMIITPTNPGSWRKGNFGGL LTPEYWAKGVGTRAAEIAMVDAFRAIPEMVRLEAYGDVENKGVPKTLERIGFQREGVLRKFMFHRGKDRDVVLYSMLVDDEKRLALVQMLSTTTMSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	0	1
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	1.7	0.9801
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	3.0	0.9741
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	3.2	0.9726
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	3.7	0.9749
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10012312 [exp]	3.7	0.9638
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034475 [exp]	4.2	0.9672
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	4.6	0.9674
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	5.7	0.9667
AT1G48960			Adenine nucleotide alpha hydro...		Lus10027236 [exp]	6.0	0.9584
AT3G47250			Plant protein of unknown funct...		Lus10020563 [exp]	6.9	0.9674

Compare expression of checked genes

Lus10006668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.