Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64300 512 / 9e-179 ATGCH, ATRIBA1, RFD1 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) AT2G22450 474 / 8e-165 riboflavin biosynthesis protein, putative (.1) AT5G59750 416 / 1e-141 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007013 [exp] 849 / 0 AT5G64300 506 / 4e-174 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10012751 [exp] 520 / 0 AT5G64300 755 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10035929 [exp] 516 / 3e-180 AT5G64300 763 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10025733 [exp] 514 / 2e-179 AT5G64300 757 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10023161 [exp] 511 / 4e-178 AT5G64300 744 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10040865 [exp] 403 / 5e-134 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Lus10005882 [exp] 281 / 2e-89 AT5G59750 502 / 2e-175 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G097300 [exp] 518 / 0 AT5G64300 773 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.017G050400 [exp] 504 / 6e-176 AT5G64300 714 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.001G310500 [exp] 504 / 2e-175 AT5G64300 764 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.005G071600 [exp] 469 / 1e-163 AT5G64300 647 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.001G234900 [exp] 419 / 2e-142 AT5G59750 770 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00926 [flax] [poplar] DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase PF00925 [flax] [poplar] GTP_cyclohydro2 GTP cyclohydrolase II
Representative CDS sequence Show only first row Show all	>Lus10006669 pacid=23152219 polypeptide=Lus10006669 locus=Lus10006669.g ID=Lus10006669.BGIv1.0 annot-version=v1.0 ATGGCAATGACTACCCATGTTCATCTCTACACTTCCCTCCATCTCTCTCATTCTCATTCACAATTTCGAGATTTCGTCACTTTGGTCCGGTCTAGAAAGG CTGGAGCTAGTTCAAGATCAGGTGGTATTGCTACAACTAGAGCTGCCTCCCTGACTTCTGGGGGTCAAGGTTCTACTCGTGAACAGTTATTGGCCAAACT AAACCCCAAGAGGAATACTAATGATTTCTCAAATACTAGAGATGGATCATATGGTACTAAGAACCAACATGATTTTGATGTTCCTACTCATGGATTCAAT TCCATCCCCGAGGCCGTCGAGGACATCCGCCAAGGCAAGATGGTGATAGTGGTGGATGATGAAGGAAGAGAGAACGAAGGAGACCTAATAATGGCGGCAT CAAAGGCAACCCCTGATGCCTTGAGTTTCATAGTCAAACATGGGACTGGGATTGTTTGTGTTAGCATGAAAAGTGACCATTTGGAGAGGTTGCAACTGCC CTTGATGGTTCCTCCTCAACGCAACAAAGACATCCTCGGTACCGCTTTTACGATCACCGTGGATGCAAAACATGGTACAACAACAGGAGTGTCAGCAGAG GACAGGGCAACAACAATACTAGCACTTGCTTCTCATGACTCAACTCCTCAACACTTCAACCGTCCAGGTCACATCTTCCCACTCAGATACACCGACCGAG GTGTGCTGGCACGGCCAGGTCACACCGAGGCCTCCGCTGACCTGGCAGTCCTCGCTGGCCTGGAGCCTGTGGCGGTGCTGACTGAGATCGTGGACGATGA CGGGTCCATGGCTAGGTTGCCTAGGTTGAAAGAGTTTGCTAAAGAGCACGACTTGAAGATCGTCTCCATCTTCGATATGATAAGGTATTTGAAGAAGCGG GAGGAGACCGTGAAGCTAGTTGCGGCCGCTAGGATGCCAACCATGTTAGGGAACTTCAAAGCACATTGCTACGAGTCTTTGTTAGACGGCGTTGAGCACA TTGCTATGGTCAAAGGCGAAATCGGAGATGGGGAGAATGTGCTGGTGAGGATACAGTCGGAGTGCCTAGCGAACGACATCTTCGGGTCGAACGTATGTGA TTGCGGAGGCCAACTCGATGATGCCATGAAGCAAATTGAGGAGGCTGGGAGAGGTGTGTTGGTTTACATCCGTGGACACAAAGGCAGAGAGATCGATTTG GGAATCAAGCTTCCTTCTTTCGTCACTGACTCATCGAAACTCGGTGCTAAAGAGTATGATGTTGCGGCCAAGATACTCAGAGATTTGGGTGTTGGCTCGA TCAAATTGATTTCGGACAGCACATCACAGTACAATGAGCTACAAGGTTATGGCTTCCCCATCGTTGAAACGGTGTCGTTGTGTTCTCCAATTCCTGAGGA GAATGATAGCAATTACAATGAAGCACAAGAATTACTCATAAACATGGGCCTATCCGTGGTTTGA
AA sequence Show only first row Show all	>Lus10006669 pacid=23152219 polypeptide=Lus10006669 locus=Lus10006669.g ID=Lus10006669.BGIv1.0 annot-version=v1.0 MAMTTHVHLYTSLHLSHSHSQFRDFVTLVRSRKAGASSRSGGIATTRAASLTSGGQGSTREQLLAKLNPKRNTNDFSNTRDGSYGTKNQHDFDVPTHGFN SIPEAVEDIRQGKMVIVVDDEGRENEGDLIMAASKATPDALSFIVKHGTGIVCVSMKSDHLERLQLPLMVPPQRNKDILGTAFTITVDAKHGTTTGVSAE DRATTILALASHDSTPQHFNRPGHIFPLRYTDRGVLARPGHTEASADLAVLAGLEPVAVLTEIVDDDGSMARLPRLKEFAKEHDLKIVSIFDMIRYLKKR EETVKLVAAARMPTMLGNFKAHCYESLLDGVEHIAMVKGEIGDGENVLVRIQSECLANDIFGSNVCDCGGQLDDAMKQIEEAGRGVLVYIRGHKGREIDL GIKLPSFVTDSSKLGAKEYDVAAKILRDLGVGSIKLISDSTSQYNELQGYGFPIVETVSLCSPIPEENDSNYNEAQELLINMGLSVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10006669 [exp]	0	1
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10013130 [exp]	1.0	0.9586
					Lus10002344 [exp]	1.7	0.9430
					Lus10028788 [exp]	2.4	0.9442
					Lus10012943 [exp]	2.8	0.8695
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013916 [exp]	3.5	0.9354
					Lus10017698 [exp]	3.9	0.9091
					Lus10022938 [exp]	4.6	0.8805
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010105 [exp]	5.3	0.7934
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Lus10038395 [exp]	6.0	0.8136
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10039945 [exp]	6.0	0.8458

Compare expression of checked genes

Lus10006669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.