Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12430 1124 / 0 AtKINUa, ARK3, PAK phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) AT1G01950 1044 / 0 AtKINUb, ARK2 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) AT3G54870 648 / 0 AtKINUc, CAE1, ARK1, MRH2 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) AT3G63480 206 / 4e-58 ATP binding microtubule motor family protein (.1.2) AT2G37420 202 / 9e-54 ATP binding microtubule motor family protein (.1) AT2G28620 197 / 6e-52 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 194 / 4e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G44730 192 / 3e-50 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT3G17360 191 / 5e-50 POK1 phragmoplast orienting kinesin 1 (.1) AT3G19050 191 / 1e-49 POK2 phragmoplast orienting kinesin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007014 [exp] 1562 / 0 AT1G12430 1304 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10009241 [exp] 1050 / 0 AT1G01950 1353 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10038007 [exp] 990 / 0 AT1G01950 1272 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10038696 [exp] 496 / 7e-161 AT1G01950 966 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10037965 [exp] 496 / 1e-159 AT1G01950 920 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10009073 [exp] 205 / 2e-54 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 204 / 3e-54 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 202 / 2e-53 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 201 / 2e-53 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117000 [exp] 1239 / 0 AT1G12430 1348 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.001G115100 [exp] 1225 / 0 AT1G12430 1325 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.014G070900 [exp] 1072 / 0 AT1G01950 1359 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.002G149400 [exp] 1070 / 0 AT1G01950 1360 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.010G227000 [exp] 518 / 7e-169 AT3G54870 938 / 0.0 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.008G035400 [exp] 283 / 1e-89 AT3G54870 345 / 8e-113 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.005G038900 [exp] 215 / 4e-61 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G082900 [exp] 205 / 1e-54 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.016G082400 [exp] 205 / 1e-54 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 200 / 6e-53 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10006670 pacid=23152223 polypeptide=Lus10006670 locus=Lus10006670.g ID=Lus10006670.BGIv1.0 annot-version=v1.0 ATGGTGGCCGACTCGGATTTCGCTGACTGCGTTGAGTTGCAGCCTGAGCTTAAGAGGCTGAAACTGCGGAAGAATAATTGGGACTCCGACACTTACGAGT TCGACGAGGTGCTCACGGAGTTTGCTTCACAGAAACGCGTTTACGAAGTCGTCGCTAAACCCGTCGTTGAGAGTGTCTTAGATGGATATAACGGAACGGT TATGGCATATGGACAGACTGGGACTGGGAAAACGTATACCGTTGGGCAACTTGGGGGCGAGGATATGGCTGCTCGTGGAATAATGGTGCGAGCTATGGAG GATATATTAGCAGGTGTTGTGCTGGAGACTGACTCAGTCTCGGTCTCTTATCTTCAGCTGTATATGGAGGCTATACAAGATCTTCTTGATCCAAATAATG ACAATATTTCTATTGTGGAAGACCACAAAACTGGAGATGTTTCATTGCCTGGAGCTACTCAAGTTGAGGTTAGGGACCAACATAGTTTTGTTGAGTTGCT TAAGTTCGGAGAAGCCCACCGCTTTGCAGCAAATACGGAATTGAATACCGAATCTTCGCGTAGCCATGCTATTCTGATGGTGAATGTGAAGAGGTCTGTT AAGGCGAAGGGTACTGCTGTTTCATGTGAAAATGGTAGCACCTTGCAGTCAGCCAAAAGTCTAAAGCCGTCTGTTGTTCGCAAAGGGAAGCTGGTTGTGG TTGATCTTGCTGGTTCAGAGCGAATTCTCAAATCAGGCTCTGAAGGGCATACACTTGAGGAAGCAAAATCCATAAATCTTTCTCTGAGTGCACTTGGGAA GTGCATTAATGCACTGGCAGAAAATAGTCCTCATATCCCAGTTCGCGATTCAAAGCTTACAAGATTGCTCCGGGATTCATTTGGAGGAACTGCACGAACT TCTCTTGTTATTACTATTGGACCATCCCCTCGTCATCGTGGAGAAACAACCAGCACCATTATGTTTGGACAAAGGGCTATGAAGGTGGAGAACATGTTGA AACTGAAAGAGGAATTTGACTACAAAAGTTTGTCCAGAAGATTAGATATACAATTAGATAGAGTTATTGCAGAACATGAAAGGCAGCAAAAGGTTTTCCA GGATGAAATCGAAAAAATAACAGCAGAAGCAGAAAGGCAACTTTATGATGCTGAAAGAAACTATACACAAGCATTAGAGGCAAGTTCTAGACAAGACTAT ACCAAGTGTGCACCACCATTAATCTTTCCTGTATTGCATGCTATTGAACACCTTTGGTTATCACCATCGATTCCTTATTTGACAAATGAACGCTTCAAAT ATCAGAAAGAGTATTTGGAATCAATCAAGAAGCTAGAGGAGAAATATATGTTGAGCCATAAAAAAAGCGTCAATGACGGGAACAAGCATGGAAATAAAGA TGTCAGTTTCAATGTCCTACCTAATGGAAAGGAATCAAAAGTTGCTCCCATGGAGGAAAATGGGGAGATGACAAAGTTGATTGAGAAGGAAAATGTTCAG AGGAAGGCTGCTGAAGAAGAAGTTCGGACTCTTAAGAGCCAGTTGGCAGAATCAAGGAGGTCGGAGGCCTTGCAGAACTCTGAGATAGTAAAGCTTCGCA AGATGCTTGAAGAAGAAGCTCACCAAAAAGAGAAACTTGAAACTGAAATAGGAAAGCTACAGAGTCACTTGCTTCAACTAAACGTGGAGGCTGATGAGAC AAGAAGGCAACTGGATTCGAGTAACTCGGAGGAAGTTCTTACTGGTTTAGACTCTTTGGTGCCTCAAGTCAGGCAACCGCATATTGACCATTCAGAAACT GGAGATAAAGCCTCAGTTGCCAAACTATTTGAGCAAGTTGGTTTGCAGAAGATTTTATCATTGCTTGAAGCAGAAGATGCTGATGTACGGATCCATGCAG TGAAAGTGGTGGCGAATCTTGCGGCTGAAGAAGCAAATCAAGAGAAGATCGTAGAAGCCGGTGGCCTAACTTCTTTGTTAAGGCTACTCAAAAGTTCCAA AGATGAAACGATACACAGAGTGGCTGCAGGAGCCATTGCAAATCTTGCAATGAATGAAACCAACCAGGAGCTGATAATGAATCAAGGTGGAATTCGTTTG CTATCGAATACAGCTTCCAAAGCAGAGGACCCACAAACTCTTCGTATGGTAGCTGGAGCTATTGCAAACCTCTGCGGCAACGATAAATTGCAAATGAAGC TGAGAGGTGAAGGTGGCATCAAGGCCTTGCTTGGAACAAAGACAGGAAGGTCGCTACTGATAGAGGATGGTGCACTTCCATGGATAGTACAGAATGCAAA CAACGAAGCCGCATCAGTAAGACGCCACATCGAACTTGCATTATGCCACTTAGCACAACACGAAGTGAATGCGAAAGACATGATCAGTGGAGGTGCAGTC CGGGAAATGGTCCGCATCTCGCGGGAATGTCCCAGGGAAGACATACGGTCTCTTGCACACAGAACGTTAACCGCCAGCACGAGTTTCAAGGCGGAATTGA GGCGTCTAGGCTAG
AA sequence Show only first row Show all	>Lus10006670 pacid=23152223 polypeptide=Lus10006670 locus=Lus10006670.g ID=Lus10006670.BGIv1.0 annot-version=v1.0 MVADSDFADCVELQPELKRLKLRKNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTYTVGQLGGEDMAARGIMVRAME DILAGVVLETDSVSVSYLQLYMEAIQDLLDPNNDNISIVEDHKTGDVSLPGATQVEVRDQHSFVELLKFGEAHRFAANTELNTESSRSHAILMVNVKRSV KAKGTAVSCENGSTLQSAKSLKPSVVRKGKLVVVDLAGSERILKSGSEGHTLEEAKSINLSLSALGKCINALAENSPHIPVRDSKLTRLLRDSFGGTART SLVITIGPSPRHRGETTSTIMFGQRAMKVENMLKLKEEFDYKSLSRRLDIQLDRVIAEHERQQKVFQDEIEKITAEAERQLYDAERNYTQALEASSRQDY TKCAPPLIFPVLHAIEHLWLSPSIPYLTNERFKYQKEYLESIKKLEEKYMLSHKKSVNDGNKHGNKDVSFNVLPNGKESKVAPMEENGEMTKLIEKENVQ RKAAEEEVRTLKSQLAESRRSEALQNSEIVKLRKMLEEEAHQKEKLETEIGKLQSHLLQLNVEADETRRQLDSSNSEEVLTGLDSLVPQVRQPHIDHSET GDKASVAKLFEQVGLQKILSLLEAEDADVRIHAVKVVANLAAEEANQEKIVEAGGLTSLLRLLKSSKDETIHRVAAGAIANLAMNETNQELIMNQGGIRL LSNTASKAEDPQTLRMVAGAIANLCGNDKLQMKLRGEGGIKALLGTKTGRSLLIEDGALPWIVQNANNEAASVRRHIELALCHLAQHEVNAKDMISGGAV REMVRISRECPREDIRSLAHRTLTASTSFKAELRRLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10006670 [exp]	0	1
					Lus10023643 [exp]	1.7	0.8295
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10028572 [exp]	5.2	0.8127
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	13.2	0.8221
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Lus10023422 [exp]	14.0	0.7817
AT3G63340			Protein phosphatase 2C family ...		Lus10000491 [exp]	14.3	0.8124
AT1G09980			Putative serine esterase fami...		Lus10038351 [exp]	14.8	0.7991
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	17.4	0.7996
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10016160 [exp]	17.5	0.7511
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10007427 [exp]	18.0	0.7995
AT1G11160			Transducin/WD40 repeat-like su...		Lus10041006 [exp]	18.6	0.7348

Compare expression of checked genes

Lus10006670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.