Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12440 200 / 2e-66 A20/AN1-like zinc finger family protein (.1.2) AT4G12040 194 / 4e-64 AtSAP7 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) AT4G22820 181 / 8e-59 A20/AN1-like zinc finger family protein (.1.2) AT2G36320 142 / 1e-43 A20/AN1-like zinc finger family protein (.1) AT2G27580 132 / 5e-40 A20/AN1-like zinc finger family protein (.1.2) AT3G52800 121 / 2e-35 A20/AN1-like zinc finger family protein (.1) AT1G51200 120 / 3e-35 A20/AN1-like zinc finger family protein (.1.2.3.4) AT4G25380 104 / 3e-29 AtSAP10, SAP10 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1) AT4G14225 100 / 9e-28 A20/AN1-like zinc finger family protein (.1) AT3G12630 100 / 1e-27 SAP5 stress associated protein 5, A20/AN1-like zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007015 [exp] 293 / 3e-103 AT1G12440 207 / 3e-69 A20/AN1-like zinc finger family protein (.1.2) Lus10028903 [exp] 239 / 8e-82 AT1G12440 205 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10008912 [exp] 237 / 5e-81 AT1G12440 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2) Lus10031833 [exp] 140 / 5e-43 AT1G51200 186 / 5e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10003246 [exp] 140 / 6e-43 AT2G36320 201 / 3e-67 A20/AN1-like zinc finger family protein (.1) Lus10031262 [exp] 134 / 3e-40 AT1G51200 187 / 2e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10030150 [exp] 114 / 8e-33 AT4G12040 119 / 8e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Lus10035603 [exp] 114 / 8e-33 AT2G36320 152 / 3e-48 A20/AN1-like zinc finger family protein (.1) Lus10020594 [exp] 107 / 1e-29 AT2G36320 149 / 2e-46 A20/AN1-like zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G115000 [exp] 210 / 2e-70 AT4G12040 169 / 4e-54 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.003G117100 [exp] 205 / 2e-68 AT1G12440 170 / 2e-54 A20/AN1-like zinc finger family protein (.1.2) Potri.009G144100 [exp] 143 / 2e-44 AT2G27580 166 / 5e-53 A20/AN1-like zinc finger family protein (.1.2) Potri.003G205500 [exp] 142 / 2e-43 AT1G51200 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.001G018600 [exp] 141 / 3e-43 AT1G51200 203 / 2e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.006G056500 [exp] 137 / 8e-42 AT1G51200 167 / 2e-53 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.016G051700 [exp] 137 / 1e-41 AT1G51200 164 / 3e-52 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.004G184300 [exp] 132 / 1e-39 AT2G27580 156 / 4e-49 A20/AN1-like zinc finger family protein (.1.2) Potri.007G078500 [exp] 120 / 4e-35 AT4G12040 120 / 6e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.015G131900 [exp] 115 / 3e-33 AT4G22820 123 / 2e-36 A20/AN1-like zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01754 [flax] [poplar] zf-A20 A20-like zinc finger PF01428 [flax] [poplar] zf-AN1 AN1-like Zinc finger
Representative CDS sequence Show only first row Show all	>Lus10006671 pacid=23152172 polypeptide=Lus10006671 locus=Lus10006671.g ID=Lus10006671.BGIv1.0 annot-version=v1.0 ATGGGTTCAGAGCAGAACGAAGGAACAAGCTTCCCACCGTCGGAGCCGATCCTCTGCGTGAACGGATGTGGGTTCTTCGGCTCGGCGTCAAACATGAACC TCTGTTCGAAGTGCTACCGGGACATACGGGCCACGGAGGAGCAAGCGGCGTCTGCGAAGGCCGTGATGGAGAAGACCCTCAGCTTCAAATCGAATGCGAA GCCCGTGGTGAAACCGGCGGCGATGATTGTGCGGGAGAAGTTGGTGATCGGTGGTGATTCGTCTTCCTCCTCGGCGGTGGCGGTGGAGACGGTGAAGGTG GCGAACAGGTGTTTGACCTGCAACAAGCGGGTGGGGTTGACCGGGTTCAAGTGCAAGTGCGGATCGACGTTCTGCGGGTCGCATAGGTATCCGGAGAACC ACGATTGCGATTACGATTTCAAGGAAGCCGGCAGGGAAGCGATCGCCAAGGCGAATCCGGTGGTGAAGGCTGATAAGGTGGAAAGGTTCTGA
AA sequence Show only first row Show all	>Lus10006671 pacid=23152172 polypeptide=Lus10006671 locus=Lus10006671.g ID=Lus10006671.BGIv1.0 annot-version=v1.0 MGSEQNEGTSFPPSEPILCVNGCGFFGSASNMNLCSKCYRDIRATEEQAASAKAVMEKTLSFKSNAKPVVKPAAMIVREKLVIGGDSSSSSAVAVETVKV ANRCLTCNKRVGLTGFKCKCGSTFCGSHRYPENHDCDYDFKEAGREAIAKANPVVKADKVERF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12440			A20/AN1-like zinc finger famil...		Lus10006671 [exp]	0	1
AT1G12440			A20/AN1-like zinc finger famil...		Lus10007015 [exp]	1.0	0.8833
AT3G53390			Transducin/WD40 repeat-like su...		Lus10000150 [exp]	2.8	0.7781
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10037607 [exp]	3.2	0.8221
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10023684 [exp]	4.9	0.8011
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10014607 [exp]	5.0	0.8006
AT5G43260			chaperone protein dnaJ-related...		Lus10015783 [exp]	7.0	0.7872
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10006868 [exp]	7.3	0.8063
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Lus10028250 [exp]	10.4	0.7594
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043185 [exp]	14.1	0.7733
AT5G61310			Cytochrome c oxidase subunit V...		Lus10001454 [exp]	16.1	0.7727

Compare expression of checked genes

Lus10006671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.