Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26900 552 / 0 BASS2 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) AT1G78560 234 / 6e-73 Sodium Bile acid symporter family (.1) AT3G25410 171 / 1e-48 Sodium Bile acid symporter family (.1) AT4G12030 154 / 2e-42 BAT5, BASS5 BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, bile acid transporter 5 (.1.2) AT4G22840 152 / 9e-42 Sodium Bile acid symporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007016 [exp] 713 / 0 AT2G26900 610 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10005565 [exp] 228 / 3e-70 AT1G78560 549 / 0.0 Sodium Bile acid symporter family (.1) Lus10013700 [exp] 228 / 1e-66 AT1G78560 554 / 0.0 Sodium Bile acid symporter family (.1) Lus10035803 [exp] 194 / 2e-57 AT1G78560 224 / 5e-69 Sodium Bile acid symporter family (.1) Lus10036583 [exp] 192 / 1e-56 AT2G26900 229 / 4e-71 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10025862 [exp] 181 / 4e-52 AT3G25410 542 / 0.0 Sodium Bile acid symporter family (.1) Lus10038237 [exp] 178 / 5e-51 AT3G25410 544 / 0.0 Sodium Bile acid symporter family (.1) Lus10028901 [exp] 149 / 3e-39 AT4G22840 464 / 4e-160 Sodium Bile acid symporter family (.1) Lus10008914 [exp] 144 / 2e-37 AT4G22840 466 / 3e-161 Sodium Bile acid symporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G074400 [exp] 582 / 0 AT2G26900 554 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Potri.011G103200 [exp] 227 / 4e-70 AT1G78560 496 / 9e-176 Sodium Bile acid symporter family (.1) Potri.003G008700 [exp] 195 / 1e-57 AT1G78560 238 / 2e-74 Sodium Bile acid symporter family (.1) Potri.014G178000 [exp] 177 / 4e-51 AT3G25410 486 / 5e-171 Sodium Bile acid symporter family (.1) Potri.003G117300 [exp] 144 / 8e-39 AT4G22840 500 / 6e-177 Sodium Bile acid symporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF01758 [flax] [poplar] SBF Sodium Bile acid symporter family
Representative CDS sequence Show only first row Show all	>Lus10006672 pacid=23152193 polypeptide=Lus10006672 locus=Lus10006672.g ID=Lus10006672.BGIv1.0 annot-version=v1.0 ATGGCTTCCATGTCTAGAATTGTGGCCAAAGACTGCCACTTTACTGCTGTTGCAGCTCTTCATAAGCCTTGTAGCTCTTCTAGTTTGTGTTCCAGAAGGC TGAGTACTCGTCTCGTTGACATTGTGCATTTCAATGTGAAAGATGTTAAAGGTTGGAACTTGGCGCCTACCAATGGAAGGATTTGCGCATCGCAAAGCAA GCCAAATATTCCAGCGTTTCATATGCTAGCTGCTTCCCCTATGATAATGCAGACTTCTAGGAACTCGATGGTTTTATGCAATGCGGCAACAAATTTATCC GGAGATGTTCCCAGCAGCAAACCTCCTACGGGAATGAGCCAGTATGAACGGATAATCGAAACCTTGACAACTCTATTTCCAGTTTGGGTGATCCTAGGCA CCATCATTGGCATCTACAAGCCATCTGCGGTTACATGGTTGGAGACGGATCTATTCACTCTTGGCCTGGGTTTTCTTATGCTTTCCATGGGATTAACTTT GAAGTTTGAAGACTTTAGACGGTGTTTGAGGAATCCCTGGACTGTTGGTGTAGGATTCCTTGCTCAGTACTTGATCAAGCCCCTTTTGGGCTTTGCGATT GCAATGACTCTGAATCTATCTGCCCCACTCGCAACTGGTCTTATTCTGGTATCTTGCTGCCCGGGAGGCCAGGCTTCTAATGTTGCAACATATATATCAA AGGGAAATGTGGCACTTTCAGTTCTTATGACAACTTGTTCTACCATCGGAGCTATTATCATGACACCACTTCTTACCAAGCTACTTGCCGGCCAGCTTGT GCCTGTTGATGCTGCTGGTCTGGCTCTGAGTACATTTCAGGTTGTGCTAATGCCAACTATTGTCGGAGTGCTAGCAAACGAGTTTTTCCCGAAGTTCACT TCAAAAATAATCTCTATAACACCTCTAATTGGAGTTATTCTCACAACCTTGCTCTGTGCCAGCCCTATTGGGCAAGTTGCAGATGTTTTGAAAACACAAG GAGCACAGCTAATACTTCCGGTAGCTTTTCTTCACGCTGCTGCATTCGCCATCGGTTACTGGATTTCAAAGTTATCGTTCGGTGAATCCACTTCTCGTAC CATTTCAATAGAATGCGGAATGCAGAGTTCTGCACTCGGATTTCTGCTTGCTCAGAAGCATTTCACAAACCCCCTAGTCGCTGTGCCTTCTGCTGTTAGC GTCGTTGCCATGGCTCTTGGTGGTAGTGCTCTTGCCGTTTTCTGGAGGAACATGCCGATCCCGGTGGATGACAAGGATGACTTCAAGGAGTAA
AA sequence Show only first row Show all	>Lus10006672 pacid=23152193 polypeptide=Lus10006672 locus=Lus10006672.g ID=Lus10006672.BGIv1.0 annot-version=v1.0 MASMSRIVAKDCHFTAVAALHKPCSSSSLCSRRLSTRLVDIVHFNVKDVKGWNLAPTNGRICASQSKPNIPAFHMLAASPMIMQTSRNSMVLCNAATNLS GDVPSSKPPTGMSQYERIIETLTTLFPVWVILGTIIGIYKPSAVTWLETDLFTLGLGFLMLSMGLTLKFEDFRRCLRNPWTVGVGFLAQYLIKPLLGFAI AMTLNLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLMPTIVGVLANEFFPKFT SKIISITPLIGVILTTLLCASPIGQVADVLKTQGAQLILPVAFLHAAAFAIGYWISKLSFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVS VVAMALGGSALAVFWRNMPIPVDDKDDFKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10006672 [exp]	0	1
AT4G23940			FtsH extracellular protease fa...		Lus10023066 [exp]	1.7	0.9637
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	2.0	0.9599
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036633 [exp]	2.4	0.9503
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	2.4	0.9465
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009031 [exp]	3.2	0.9470
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10012652 [exp]	3.2	0.9398
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10032542 [exp]	4.2	0.9408
AT4G19420			Pectinacetylesterase family pr...		Lus10033304 [exp]	4.5	0.9278
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	4.6	0.9452
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	4.9	0.9500

Compare expression of checked genes

Lus10006672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.