Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12450 273 / 5e-91 SNARE associated Golgi protein family (.1) AT4G12000 250 / 4e-82 SNARE associated Golgi protein family (.1) AT4G22850 250 / 4e-82 SNARE associated Golgi protein family (.1.2) AT2G02370 189 / 6e-58 SNARE associated Golgi protein family (.1.2) AT1G22850 52 / 2e-07 SNARE associated Golgi protein family (.1) AT1G03260 51 / 3e-07 SNARE associated Golgi protein family (.1) AT5G19070 42 / 0.0002 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007018 [exp] 471 / 1e-168 AT1G12450 364 / 6e-127 SNARE associated Golgi protein family (.1) Lus10008915 [exp] 319 / 4e-109 AT1G12450 338 / 5e-117 SNARE associated Golgi protein family (.1) Lus10028900 [exp] 291 / 5e-98 AT1G12450 348 / 9e-121 SNARE associated Golgi protein family (.1) Lus10012163 [exp] 192 / 4e-59 AT2G02370 401 / 4e-141 SNARE associated Golgi protein family (.1.2) Lus10007583 [exp] 166 / 4e-49 AT2G02370 399 / 2e-140 SNARE associated Golgi protein family (.1.2) Lus10006162 [exp] 51 / 6e-07 AT1G22850 394 / 2e-137 SNARE associated Golgi protein family (.1) Lus10041062 [exp] 50 / 6e-07 AT1G22850 377 / 2e-131 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 49 / 1e-06 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117400 [exp] 318 / 1e-108 AT1G12450 343 / 1e-118 SNARE associated Golgi protein family (.1) Potri.001G114600 [exp] 306 / 3e-104 AT1G12450 317 / 3e-108 SNARE associated Golgi protein family (.1) Potri.001G078700 [exp] 185 / 3e-56 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2) Potri.003G151800 [exp] 181 / 7e-55 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2) Potri.019G071900 [exp] 51 / 3e-07 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1) Potri.013G099600 [exp] 51 / 5e-07 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10006674 pacid=23152188 polypeptide=Lus10006674 locus=Lus10006674.g ID=Lus10006674.BGIv1.0 annot-version=v1.0 ATGACTTATAGACACGATGACGACGGAGTGGTTCCGGAGCTGAGGATGAGAGTGGAAGACGACGACGGCGACGGAGGAAAGAATCATGTTGTTGTTAGTA AGAGCGGGTATATGAGATTGAGAGGAGGAGAGCTAGAGGAAGAAGAAGGAGAAGAAATGCTTCGTAAATCAGGGTCTGGATTCTTCTGCTGGAGGTGGAG ATGGTGTGTTGTTTGGTACTGGTTAAAGCTCGCCGTTGTGTTCGCCTTCATTGGTGGGTTGGCTTTCGTTGTGCTCAAATGGGTTGGTCCCTACTTCATG GACAAGGAGATCATTCCCATTATAAACTGGGAGACAGACACGTTTAGCACACCAGTGTTGGCACTTCTGGTGTTTGTATCAGTGGCATTGTTCCCAACTT TGCTATTGCCTTCTTCGCCGTCTATGTGGATTGCTGGGATGACCTTTGGTTATGGATATGGGTTCTTACTGCTTACTGCAGCACTTTGTATTGGAATCTC TCTTCCATTCTGCATTGGGTCTCTTTTCCTTCATAAGATTCAGGGATGGTTGGAGAAGTATCCGAAGCAGGCTTCGGTGTTGAGATCAGCTGGTGAAGGG AACTGGTTTCATCAGTTCCGTTCCGTGGCTTTGATAAGGGTTTCACCGTTTCCTTACATCCTTTATAATTACTGTGCCGTTGCCACGCATGTCAAGTACG GTCCTTATTTGCTGGGGTCAATAGTTGGTATGATCCCGGATACGTTTGTCACAATCTACACTGGGATACTCATAGAGACCTTGGCAGACGCTTCTCAGGA TGATCTGAACTTAACACCCTCGCAGATAGCCATGAATGTTGCCGGCTTCTGCTGTACTGCAGCCACCACAGTGTTCTTCACCGTGTACGCTAAAAGGCGA CTCAAGGCAATCCAAGACGAACCACTTCTGTCGTAG
AA sequence Show only first row Show all	>Lus10006674 pacid=23152188 polypeptide=Lus10006674 locus=Lus10006674.g ID=Lus10006674.BGIv1.0 annot-version=v1.0 MTYRHDDDGVVPELRMRVEDDDGDGGKNHVVVSKSGYMRLRGGELEEEEGEEMLRKSGSGFFCWRWRWCVVWYWLKLAVVFAFIGGLAFVVLKWVGPYFM DKEIIPIINWETDTFSTPVLALLVFVSVALFPTLLLPSSPSMWIAGMTFGYGYGFLLLTAALCIGISLPFCIGSLFLHKIQGWLEKYPKQASVLRSAGEG NWFHQFRSVALIRVSPFPYILYNYCAVATHVKYGPYLLGSIVGMIPDTFVTIYTGILIETLADASQDDLNLTPSQIAMNVAGFCCTAATTVFFTVYAKRR LKAIQDEPLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12450			SNARE associated Golgi protein...		Lus10006674 [exp]	0	1
AT1G12450			SNARE associated Golgi protein...		Lus10007018 [exp]	1.0	0.9022
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10041132 [exp]	2.8	0.8622
AT1G80400			RING/U-box superfamily protein...		Lus10023112 [exp]	3.0	0.8582
AT1G57790			F-box family protein (.1)		Lus10017027 [exp]	4.0	0.8334
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10020435 [exp]	4.2	0.8441
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	4.9	0.8486
AT5G52880			F-box family protein (.1)		Lus10039308 [exp]	6.0	0.8287
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	9.2	0.8420
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10010096 [exp]	10.4	0.7767
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10030786 [exp]	10.6	0.8199

Compare expression of checked genes

Lus10006674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.