Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12460 870 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G62950 863 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G01890 398 / 6e-124 Leucine-rich receptor-like protein kinase family protein (.1) AT3G28040 377 / 8e-116 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 350 / 6e-105 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G07280 347 / 4e-103 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G75820 330 / 1e-98 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 328 / 7e-98 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 322 / 3e-95 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G13380 302 / 2e-87 BRL3 BRI1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007019 [exp] 839 / 0 AT1G62950 553 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10007020 [exp] 672 / 0 AT1G12460 435 / 2e-146 Leucine-rich repeat protein kinase family protein (.1) Lus10025139 [exp] 424 / 3e-134 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025223 [exp] 417 / 2e-131 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030526 [exp] 394 / 3e-122 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022738 [exp] 389 / 1e-120 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10035687 [exp] 322 / 3e-95 AT3G28040 1021 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 317 / 4e-93 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 316 / 4e-93 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117500 [exp] 1055 / 0 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G114500 [exp] 1047 / 0 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G137000 [exp] 431 / 1e-136 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 417 / 5e-131 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G091000 [exp] 410 / 2e-128 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 405 / 2e-126 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G241500 [exp] 332 / 2e-99 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 328 / 2e-97 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G063300 [exp] 316 / 1e-92 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 311 / 7e-92 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10006675 pacid=23152183 polypeptide=Lus10006675 locus=Lus10006675.g ID=Lus10006675.BGIv1.0 annot-version=v1.0 ATGAGAAGGTTTTGCAAGTTGTGTGTCCTTTATGCTCTCTTCTTGTTGTGGTTAACTGCCTTGTACGTGGATTCTCAGCAGCTAGCCAATGATGAGAAGG AGATCTTGCTGCAGTTTAAAGGAAACATCACTAGAGATCCTTACAACAGCTTGTCCACATGGATTCCCACAGCCGGCATAAGCCCTTGTGAGTTCAGTGG AGTGTTCTGCAACTCAGCTGGATTCGTGGAGAGGATTGTGCTTTGGAACACTAGCCTCTCTGGAGTTCTCTCGCCGTCATTATCAGGTTTGAGATCTCTG AGAATCTTGACATTGTATGGGAATCAGTTCACTGGGAGTATCCCGAATGAGTATTCACAGCTTTCCACATTGTGGAAGATTAATGTCAGTTCCAATGCTT TGTCCGGATCAATCCCGGAGTTCATTGGTGATTTGGGGAACATTCGGTTTTTGGACTTGTCAAGGAATGGATTTGTTGGGGAGATACCTTCAGCTTTGTT CAAGTTCTGCTTCAAGACCAAGTTTGTCTCTTTTGCTCATAATGGCCTTTCTGGTTCTATTCCTTTGTCGATTGTGAACTGTAGGAATCTAGAAGGTGTT GATTTCGCTTTCAACAATCTTACTGGCGAATTGCCTCCTGGAATTTGTGATGTTCCTTTGCTACGGTATCTGTCATTGAGAAGCAATGTGTTGACTGGGA GTGTTCAAGAGGAAGTAGAGACTTGCCAAAGGTTGAGTTTTATGGATCTTAGCAGCAATGAGTTCTCTGGGTTGGCTCCATTCAAGGTTGTTGGATTGCA GAACATGACATATTTCAACGTCTCACAGAACGAGTTTCGTGGAGAGATTCCGGAATTGGAAATCTGCAGCGAGAGGCTGGAAATCTTTGATGTTTCGGGG AATGGCTTAGATGGTGGGATCCCGCTGAGCATTACAAAGTGCATAAATCTTGTGCTTTTTGACGTTGGATTCAACAGGTTGAATGGGAGCATTCCAGTTG AGATCACAGAGCTGAAAAGGCTTTTGGTTGTTAATCTGGGGAGCAATCCTATAGGTGGAATGATTCCTCCAGGTTTTGGAAGCATTGAGCTGCTTCTGGT TTTGGATTTCCACAACCTCAACCTTTCTGGCCCAGTTCCTGAAGACATAAGCAATTGCAAGTTTCTCCGCGAGCTGGATATCTCTGGCAATGGCTTGAAT GGAGAAATTCCTAGTACACTTTCCAACATAACTTCTTTGGAAGTTCTTGATCTACACAGCAACCATTTCAATGGAAGCATACCGGAGACACTCGGGAACT TCTCAATGCTCAAACTTCTCGACTTGTCAGGAAACGATCTTTCTGGCACGATCCCGGCTTCTCTAGCAAAGCTGTCGAATCTAACGCATCTAAACCTATC CTCCAACAGTCTATTTGGTCCAATTCCTCTCCAGGGATTTGGTCCGGCTCCATTCCTTAACAACTCGGGGTTATGTGGCCCTCCTTTACAGAATTCATGC AATAATGGGACCGCATCATCATCCAAGAGAAGCAAAGTGCTTAGCAATTCAGTCATTGTGGCGATCGTAGCTGCAGCTCTGATCCTCATCGGAGTCTGCG CGGTATCGATCATGAACATCAAAGCACGTGCAGGGGTGGAAAGTAGTAGGAACGAGGCGGTAGTAGTCATTGAGAGCACGCCACTAGGTTCGAGTTCGAC AGATTCTAGTGTGAAGATAGGAAAGCTGGTTCTTTTCAGCAAAACACTACCTTCAAAGTATGAAGACTGGGTAGCTGGCACCAGAGCTTTACTTGATAAG GAGTTCCTGATAGGAGGTGGATGCATAGGTGTGGTGTATAGAACTAATTTCGAAGGTGGGGTTTCGATTGCAGTGAAAAAGCTTCAAACTTTGGGGAGGA TCCGAAGCCTAGACGAATTCGAGCACGAAATTACACGGTTAGCCAACCTCAGGCATCCGAGTTTGGTTTCGCTCCAAGGTTACTACTGGTCGATTTCCAT GAAGTTGATCCTATCCGAATTCTGTCCGAACGGTAGCCTGGATCAGAACCTGCACGGGGTTGATTATCCCGGTACCAGTACTTATAATGTTGGTACCAGT ACTGAATTGCATTGGTCCAGGAGGTTTCAGATTGCCATTGGTATAGCCAGAGCACTTTCTTACCTTCACCACGACTGTAAACCCCCCATTCTCCATTTCA GCATCAAAGCCTCCAACATACTCTTGACCGAAAACTACGAGCCTAAGTTATCCGATTATGGGTTGGGGAAGTTCCTACCGATCTTGGATCCTCATGCATC GACCAGGCTGAACAACGCTCCGGGTTACGTTGCCCCCGAGCTGCTTCAGAGTCTTAGAGTAAGTGACAAAGTTGATGTGTATAGTTTCGGAATAATTCTG TTGGAGCTCATAACCGGGAAGAAACCAGTTATCTTCCTGTCAAACGAGGTGGTGGCATTGCGTGACTATGTTCGCAATCTGGTGGATCTCGGTCGTGCCT CTGATTGTGTCGACAGCAATCTGAGGGATCCTCCGGAGAGTGAGCTGATTCAGGTGATGAAACTCGGGTTGATCTGTACAACTGAAGTTCCTTCCAAGAG GCCAAGCATGGCTGAGGTCGTTCAAGTTCTTGAGTCTATCAGAAATGGAGCAGATTCTTCATAG
AA sequence Show only first row Show all	>Lus10006675 pacid=23152183 polypeptide=Lus10006675 locus=Lus10006675.g ID=Lus10006675.BGIv1.0 annot-version=v1.0 MRRFCKLCVLYALFLLWLTALYVDSQQLANDEKEILLQFKGNITRDPYNSLSTWIPTAGISPCEFSGVFCNSAGFVERIVLWNTSLSGVLSPSLSGLRSL RILTLYGNQFTGSIPNEYSQLSTLWKINVSSNALSGSIPEFIGDLGNIRFLDLSRNGFVGEIPSALFKFCFKTKFVSFAHNGLSGSIPLSIVNCRNLEGV DFAFNNLTGELPPGICDVPLLRYLSLRSNVLTGSVQEEVETCQRLSFMDLSSNEFSGLAPFKVVGLQNMTYFNVSQNEFRGEIPELEICSERLEIFDVSG NGLDGGIPLSITKCINLVLFDVGFNRLNGSIPVEITELKRLLVVNLGSNPIGGMIPPGFGSIELLLVLDFHNLNLSGPVPEDISNCKFLRELDISGNGLN GEIPSTLSNITSLEVLDLHSNHFNGSIPETLGNFSMLKLLDLSGNDLSGTIPASLAKLSNLTHLNLSSNSLFGPIPLQGFGPAPFLNNSGLCGPPLQNSC NNGTASSSKRSKVLSNSVIVAIVAAALILIGVCAVSIMNIKARAGVESSRNEAVVVIESTPLGSSSTDSSVKIGKLVLFSKTLPSKYEDWVAGTRALLDK EFLIGGGCIGVVYRTNFEGGVSIAVKKLQTLGRIRSLDEFEHEITRLANLRHPSLVSLQGYYWSISMKLILSEFCPNGSLDQNLHGVDYPGTSTYNVGTS TELHWSRRFQIAIGIARALSYLHHDCKPPILHFSIKASNILLTENYEPKLSDYGLGKFLPILDPHASTRLNNAPGYVAPELLQSLRVSDKVDVYSFGIIL LELITGKKPVIFLSNEVVALRDYVRNLVDLGRASDCVDSNLRDPPESELIQVMKLGLICTTEVPSKRPSMAEVVQVLESIRNGADSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12460			Leucine-rich repeat protein ki...		Lus10006675 [exp]	0	1
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031337 [exp]	3.5	0.9000
AT1G12460			Leucine-rich repeat protein ki...		Lus10007020 [exp]	3.7	0.8626
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Lus10023359 [exp]	6.3	0.8684
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	6.5	0.8767
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Lus10026312 [exp]	8.8	0.8365
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031909 [exp]	9.4	0.8828
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10026397 [exp]	12.1	0.8841
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10017534 [exp]	14.3	0.8881
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10040883 [exp]	14.5	0.8722
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10037180 [exp]	16.7	0.8500

Compare expression of checked genes

Lus10006675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.