Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62960 597 / 0 ACS10 ACC synthase 10 (.1) AT5G51690 547 / 0 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) AT4G37770 409 / 4e-138 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT4G26200 399 / 2e-134 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT3G49700 385 / 5e-129 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT2G22810 385 / 5e-129 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT5G65800 383 / 5e-128 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT1G01480 377 / 1e-125 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) AT4G08040 374 / 1e-124 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT4G11280 369 / 4e-122 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007021 [exp] 954 / 0 AT1G62960 612 / 0.0 ACC synthase 10 (.1) Lus10038899 [exp] 579 / 0 AT5G51690 702 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10015023 [exp] 577 / 0 AT5G51690 704 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10032695 [exp] 407 / 9e-138 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10008579 [exp] 403 / 3e-136 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10011565 [exp] 383 / 6e-128 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10036396 [exp] 379 / 8e-126 AT3G61510 660 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10007910 [exp] 378 / 1e-125 AT3G61510 659 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10039647 [exp] 376 / 7e-125 AT4G37770 739 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117700 [exp] 711 / 0 AT1G62960 664 / 0.0 ACC synthase 10 (.1) Potri.015G132100 [exp] 624 / 0 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.018G067000 [exp] 421 / 3e-143 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.006G149600 [exp] 405 / 5e-137 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.007G007800 [exp] 404 / 2e-136 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.014G012600 [exp] 401 / 3e-135 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.001G099400 [exp] 394 / 2e-132 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.002G113900 [exp] 390 / 5e-131 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.002G163700 [exp] 390 / 9e-131 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Potri.003G132300 [exp] 386 / 2e-129 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10006676 pacid=23152180 polypeptide=Lus10006676 locus=Lus10006676.g ID=Lus10006676.BGIv1.0 annot-version=v1.0 ATGACTACTCTTCTCCTCCTCCCCTCCCCCCGCCCCCCAAAGAGGCCCCGCGGCCACGCCCCCAAGAAACCCTGGCCCGAGCCCGGCGGCGGTGGCGGAG GAGCAACTACAGCGATGAGAGTTATAATCCCTCTTCAAGGAGTAGTCCAAGGAAGTGGAGGAGTTTTCCTGGGTTCGGTAATCCCCTGCGCGCTCTTTTA CTTCCTCCAGCTGTATCTCAGGAGAAACCACGGCAGTTCCGACCCGGGAGAGCCTGAGGACCAGAATTCTCCGAGCTCGGACCCGGCGGATGAGCCCGGT CCGTCTGGGCAGCTTCTCCGTCGGACTTCTTCTCGCAATCTCCTGTCGCCGAGGACTCGGACGTACGTTTCGAATCGCGCCGCCGTGATAGCGAAGACTG GTGACGGCGGTAGTGGTGGTGGTTGTGAGTCGCCGTACTATGTTGGGTTGAGAATAGCGGCGGAGGATCCGTACGACGAGACGGAGAATCCGAATGGGGT TATCCAGCTCGGTCTGGCGGAGAACAAGTTGACGATGGACTTGGTGAAGGAGTGGCTGGTTAAGAATGCAAAAGAAGCCATTGTTGGAGGAGGTGGAAGG AATGAGCATTTGAGTATCAATGGTTTTGCTACTTACTTGCCTTGTCATGGACTGATGGACCTCAAAGTGGTTGTGTCAAGCTTCATGTCACATTGTACGG AACAATCACTATCTTTCAACCCTTCAAACATCATACTAACAGCGGGCGAAACTGCTGCAATCGAGATACTAAGCTTCTGTCTAGCAGATTCCGGGAACGC ATTCCTTGTTCCGACACCATATTATCCGGGATTCGACAGGAACGTGAAATGGAGAACCGGAATTGAGATAATACCAGTTCCTTGCCGCAGCGCTGACAAT TTCGCTCTCAGCATAACCGCGCTGGATCGAGCATTCCACCAGGCAAAGAAACGCGGTCTCAGAGTCCGCGGAATAATAATCTCGAACCCTTCCAGTCCGG TTGGCAATCTGCTCAGCCGAGAAACCCTCTACAGCCTTCTCGACTTCGCCAGCGAGAAGAATATCCACTTTGTCTCCAACGAGCTCTTTGTTGGAAGCAG CAGCGAGTTCGTGAGTGTAGCAGAACTCGTAGATGAATTGAGCAAGGACAGAGTTCATGTGGTGTATGGCCTCTCTGAAGACATCTCCATTCCAGGCTTT CGAGTCGGAGTTATCTACTCCTGTAACGAGACCGTCCTCTCCGCAGCTCGAGAGCTGGCACGATTCTCGTCAGTTTCGTCCCCAACGCAGCGCATACTGA TTTCGATGCTATCGGATTCCCAATTTGTTCGCCAGTTTGTGAAGGTCAGTAGAGAAAGGCTCCGAAACATGTACAGCACTTTTGCATCGGGACTGAAGAA GCTAGGGATTCAGTGTATAAACAGCAATGGTGGATTCTTCTGCTGGGCGAATATGAGTGAGCTGATAAGCTCGTACAGTGAGAAAGGAGAGCTTGAGCTT TGGGACAAATTATTGAATACTGCTAAGCTCAATGTAACTCCTGGATCTTGCTGTCACTGCATCGAACCGGGATGGTTCAGATTCTGCTTTGCTACCTTGA CAGAGGGTGACATCCCTGTCGTTATCGATCGAATACGTCGTGTTTCTGATTCATGTAAATCTCAAAGTTGA
AA sequence Show only first row Show all	>Lus10006676 pacid=23152180 polypeptide=Lus10006676 locus=Lus10006676.g ID=Lus10006676.BGIv1.0 annot-version=v1.0 MTTLLLLPSPRPPKRPRGHAPKKPWPEPGGGGGGATTAMRVIIPLQGVVQGSGGVFLGSVIPCALFYFLQLYLRRNHGSSDPGEPEDQNSPSSDPADEPG PSGQLLRRTSSRNLLSPRTRTYVSNRAAVIAKTGDGGSGGGCESPYYVGLRIAAEDPYDETENPNGVIQLGLAENKLTMDLVKEWLVKNAKEAIVGGGGR NEHLSINGFATYLPCHGLMDLKVVVSSFMSHCTEQSLSFNPSNIILTAGETAAIEILSFCLADSGNAFLVPTPYYPGFDRNVKWRTGIEIIPVPCRSADN FALSITALDRAFHQAKKRGLRVRGIIISNPSSPVGNLLSRETLYSLLDFASEKNIHFVSNELFVGSSSEFVSVAELVDELSKDRVHVVYGLSEDISIPGF RVGVIYSCNETVLSAARELARFSSVSSPTQRILISMLSDSQFVRQFVKVSRERLRNMYSTFASGLKKLGIQCINSNGGFFCWANMSELISSYSEKGELEL WDKLLNTAKLNVTPGSCCHCIEPGWFRFCFATLTEGDIPVVIDRIRRVSDSCKSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10006676 [exp]	0	1
AT5G06130			chaperone protein dnaJ-related...		Lus10014223 [exp]	5.8	0.8283
AT3G49060			U-box domain-containing protei...		Lus10036362 [exp]	5.9	0.7976
AT1G13990			unknown protein		Lus10037142 [exp]	8.2	0.8081
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10007964 [exp]	8.6	0.8121
AT1G44820			Peptidase M20/M25/M40 family p...		Lus10042502 [exp]	8.8	0.7462
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10040516 [exp]	10.0	0.8075
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10020519 [exp]	11.9	0.8108
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10030365 [exp]	13.2	0.7321
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10009190 [exp]	13.4	0.7526
AT5G39450			F-box family protein (.1)		Lus10037697 [exp]	14.8	0.7082

Compare expression of checked genes

Lus10006676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.