Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22860 346 / 2e-113 Cell cycle regulated microtubule associated protein (.1.2) AT4G11990 285 / 7e-90 Cell cycle regulated microtubule associated protein (.1) AT1G03780 128 / 6e-31 AtTPX2, TPX2 targeting protein for XKLP2 (.1.2.3) AT5G07170 85 / 2e-17 Cell cycle regulated microtubule associated protein (.1) AT5G62240 62 / 3e-10 Cell cycle regulated microtubule associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007022 [exp] 502 / 1e-176 AT4G22860 209 / 3e-63 Cell cycle regulated microtubule associated protein (.1.2) Lus10018608 [exp] 105 / 1e-23 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10039844 [exp] 103 / 6e-23 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10033674 [exp] 86 / 2e-17 AT1G03780 718 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10017715 [exp] 85 / 7e-17 AT1G03780 687 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10031109 [exp] 74 / 6e-14 AT5G07170 124 / 6e-31 Cell cycle regulated microtubule associated protein (.1) Lus10031690 [exp] 73 / 2e-13 AT4G22860 117 / 2e-29 Cell cycle regulated microtubule associated protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117800 [exp] 469 / 2e-161 AT4G22860 377 / 8e-126 Cell cycle regulated microtubule associated protein (.1.2) Potri.001G114400 [exp] 416 / 7e-141 AT4G22860 353 / 4e-117 Cell cycle regulated microtubule associated protein (.1.2) Potri.012G130300 [exp] 120 / 2e-29 AT4G22860 164 / 2e-45 Cell cycle regulated microtubule associated protein (.1.2) Potri.007G138600 [exp] 121 / 9e-29 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.017G013100 [exp] 106 / 5e-24 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12214 [flax] [poplar] TPX2_importin Cell cycle regulated microtubule associated protein
Representative CDS sequence Show only first row Show all	>Lus10006677 pacid=23152228 polypeptide=Lus10006677 locus=Lus10006677.g ID=Lus10006677.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAAATGGAGGTGGATTTGCTCTACTACGAGGCTCGCGAAGTGGATCCTGACTACGAGTTCGATGCTCCGATGTTCTTCGATTTCGTCAGCG AAGAGACGTTCGCGGAGGCGATCCTCGCTCAGCGGTGGTTCGACTCGGCGCCTAGTTATCCTCCGTCCCCTTTTGTGGCAAAGTTGGAGCTCAGAGAGGA AATCTTGTTGAAGAACATTAATACTTCTCCCAAACCTAAAGGCATTGAATATTTGGATGATGATGACGGCGGTGGTGATCTGGGCCCGGGACATGCTGCT GCGACGACGGTGGGAGATGGTCATAAAGGGATTGGTTATGCGGGCTGCCCTGAGATTGCGACTGATGTTGATAGCCAGTTAGCAGCGTTCTCTGGGGAAG ATTTTGATTTGTGGATCTGGGTAGTGGTTGTAGTCGGTGTAATTTCACGTCTGGGAGACATTCATGGCAGAGAGTATGGTGGATTCATATTTTACAATCA TTTAAAGGGTGAAAAGCTCAAAGCCAAGACGAACCCATCAAAGCCTAAATCTCGAGGTTGCTCAACATTGATGAGACCAACAGCTAGCTTGTTGGCTAAG CAAACTCAGGCACCTCGTAATGGTGGCTCTAGGTTTCAAATGCTAACGGATCAGAAGGAAGAAAGCGTACATAATACTTCTATTGTTGAAGGTCAGGCTG CCAAAAGGCAGAAATTAGAGGGAGGGCACCTGCGCAAGGTTGGTGATGGAAAACCACAGATTGATTTCCTCCATAAAGCACCTGCAAAGCTGAGGTTAAC CATTCCAAGAGAGCCTGACTTTGAGACGGATTGCAGAGCACATAGAACAAGGCCTGTAAATAATACAACAGAACTTGAGCACACTACAGATCCTGTTCGA AGATTCAAAGCACGCCCTCTAAACCGAAAAATTCTTGAGGCTCCTTCATTGCCCATCCCGACGAGAAGCGCTCCAAGGATGCCCGAATTTCAAGAATTTC GCCTAAAGACATCAGAAAGGGCCAAGCACCATACATCTACAGTAAATTCTTCCTCACTTCACTGCAATAATTCTAATCAGGGCATGGACAGGCAAAATAC TGTCTCTGTGGCAGAAACTGGAAAGAGAGAATCCAGAAGACCCAGTACCCTCAATACTAAGAAGCAGGATGTAAAAAGTACAGTACATATATTTAAAGCT CGTCCACTCGATAAAAAGATACTTTCTAGCAAAGGAGACATTGGTGTTTTCCGCAACAGCAAGCGACAAACCACAGTGCCTATGGAATTTAATCTCCATA CCGATAGGAGAACTCATAATCCTCCAATAGACTTGTTCAGTAAGGTAGCCTTTGGCTGCAATGCTCTGACGTTAAAATCCGAAATCCAGCCAAACGGCCA ACCTCAGTCCCAGTTTAGTCGACCTAACTCTGTAGCAAAAGAGGGCTTAAAAGAGAACCAGATGAATTCTCTGAATACAGACCGCAAGTCCCTGCATATA CCGAAAGGAAGGCCATCCGGTTTTAGCGGGAAGCAAATTCATCTAGGAAACACAGGATGCAACAGTGATGTCGGAAACCAGTACAGCCTTAGGTATGCTG CTGCCACAAGAAAGGAGCTTGGACATCCGGTGAGAGTAGCCGAAACCTGA
AA sequence Show only first row Show all	>Lus10006677 pacid=23152228 polypeptide=Lus10006677 locus=Lus10006677.g ID=Lus10006677.BGIv1.0 annot-version=v1.0 MEEEMEVDLLYYEAREVDPDYEFDAPMFFDFVSEETFAEAILAQRWFDSAPSYPPSPFVAKLELREEILLKNINTSPKPKGIEYLDDDDGGGDLGPGHAA ATTVGDGHKGIGYAGCPEIATDVDSQLAAFSGEDFDLWIWVVVVVGVISRLGDIHGREYGGFIFYNHLKGEKLKAKTNPSKPKSRGCSTLMRPTASLLAK QTQAPRNGGSRFQMLTDQKEESVHNTSIVEGQAAKRQKLEGGHLRKVGDGKPQIDFLHKAPAKLRLTIPREPDFETDCRAHRTRPVNNTTELEHTTDPVR RFKARPLNRKILEAPSLPIPTRSAPRMPEFQEFRLKTSERAKHHTSTVNSSSLHCNNSNQGMDRQNTVSVAETGKRESRRPSTLNTKKQDVKSTVHIFKA RPLDKKILSSKGDIGVFRNSKRQTTVPMEFNLHTDRRTHNPPIDLFSKVAFGCNALTLKSEIQPNGQPQSQFSRPNSVAKEGLKENQMNSLNTDRKSLHI PKGRPSGFSGKQIHLGNTGCNSDVGNQYSLRYAAATRKELGHPVRVAET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22860			Cell cycle regulated microtubu...		Lus10006677 [exp]	0	1
AT4G24710			P-loop containing nucleoside t...		Lus10019473 [exp]	1.0	0.9668
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	1.7	0.9596
AT3G01015			TPX2 (targeting protein for Xk...		Lus10030836 [exp]	3.5	0.9501
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10019248 [exp]	3.6	0.9408
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	4.0	0.9661
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10007522 [exp]	4.9	0.9571
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	6.5	0.9392
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	6.7	0.9518
AT4G22860			Cell cycle regulated microtubu...		Lus10007022 [exp]	6.9	0.9278
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10018399 [exp]	8.7	0.9320

Compare expression of checked genes

Lus10006677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.