Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12480 716 / 0 SLAC1, RCD3, CDI3, OZS1 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) AT5G24030 434 / 5e-145 SLAH3 SLAC1 homologue 3 (.1) AT4G27970 413 / 1e-138 SLAH2 SLAC1 homologue 2 (.1) AT1G62262 195 / 1e-56 SLAH4 SLAC1 homologue 4 (.1) AT1G62280 189 / 4e-54 SLAH1 SLAC1 homologue 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007023 [exp] 1014 / 0 AT1G12480 720 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Lus10027553 [exp] 462 / 3e-156 AT5G24030 669 / 0.0 SLAC1 homologue 3 (.1) Lus10039312 [exp] 458 / 2e-154 AT5G24030 670 / 0.0 SLAC1 homologue 3 (.1) Lus10015133 [exp] 186 / 1e-52 AT1G62280 387 / 6e-133 SLAC1 homologue 1 (.1) Lus10024306 [exp] 184 / 2e-52 AT1G62280 349 / 7e-119 SLAC1 homologue 1 (.1) Lus10031545 [exp] 50 / 1e-06 AT1G62280 160 / 3e-48 SLAC1 homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G114300 [exp] 412 / 2e-140 AT1G12480 432 / 4e-149 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Potri.015G026700 [exp] 231 / 1e-71 AT5G24030 367 / 3e-124 SLAC1 homologue 3 (.1) Potri.015G026801 [exp] 157 / 1e-43 AT5G24030 223 / 4e-68 SLAC1 homologue 3 (.1) Potri.012G035300 [exp] 123 / 3e-32 AT5G24030 172 / 1e-50 SLAC1 homologue 3 (.1) Potri.010G170050 [exp] 100 / 2e-24 AT1G62280 136 / 7e-39 SLAC1 homologue 1 (.1) Potri.002G227800 [exp] 0 / 1 AT1G62280 120 / 7e-31 SLAC1 homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03595 [flax] [poplar] SLAC1 Voltage-dependent anion channel
Representative CDS sequence Show only first row Show all	>Lus10006678 pacid=23152169 polypeptide=Lus10006678 locus=Lus10006678.g ID=Lus10006678.BGIv1.0 annot-version=v1.0 ATGGAGGGGATGGCTACAACATCATCATCAACAACAACAACAACATCGGCAGAGATGACTCCGAATCGGAGGGACTCACATTTCGTGGACATCCACGAGG TGAACAACGAAGGGGAAGAAGAAGAGACGGAGGAGGGATTAGGGGATCACAAGAAACAAAAGAGGCAGTTCAAAATGAGAGGTCTAAGGAATGGAGGTAG TAGTACTAGTACGCATTTCAGCAGGCAGGTATCGTTGGAGACGGGGTTTGCAGTGCTGTCGAATTCGAAAGATGGTGGTGGTGAGAGTAGGAAGTCTCTT CCGAGGAGCGTGACGAGCTTGGGTGGGTTTGATTACAGGGTTAACAGAGGAGGAGGGGAGAAGAAGGGGGATTTCAGCATGTTTCGGACTAAGTCGAGTT TGAGCAAGCAGAATTCCTTCCTGCCTATTAGGAAAGGGGAGAGGTCGTCGGAGCAGATGGAGTATTGGTCTGGTCAGAGGAACGAGGCCGGTTCGAGGAA TGACGAGAATGGGAATGGTGGTGGTGGTAATGGTGGTGATTCTGTTCATAATGGTGTTCCTGCTGGGAGGTACTTTGCTGCTCTTACTGGACCGGAGCTC GACCAAGTCAAGGATTCTGAAGATATTCTGCTCCCGAAGGACGAGAAATGGCCATTCCTACTGCGATTCCCAATAGGTTGCTTCGGTATCTGTCTCGGCC TAAGCAGCCAAGCCGTACTCTGGCGAGCTTTAGCCACAAATCCAGCCACAAAGTTCCTCCATGTCACACCGTACATCAACCTCTTCCTCTGGGTCTTCGC CATAGCGGTCCTGGTCGCAGTTGGGACAACCTACATCTGCAAATGCATCTTCTACTTCGAAGCCGTGAGGAGGGAGTACTTCCACCCGGTTCGTGTCAAC TTCTTCTTTGCCCCTTGGGTGGTATGCATGTTCCTAGCCATCGCCACTCCTCCCTCGATCGTACCCCTCCACGAGAAGCTCCACCCGGCTATCTGGTGCG TCTTCATGGGCCCTTACTTCTTCCTCGAGCTCAAGATCTACGGCCAGTGGCTCTCAGGCGGGAAGAGGCGGCTTTGCAAGGTGGCTAACCCGTCTTCTCA TCTCTCCGTGGTGGGTAACTTTGTGGGTGCAATCTTGGCTACTAGAGTTGGGTGGATGGAAGCTGCTAAGTTTCTATGGGCAGTTGGTTTTGCACATTAC CTTGTTGTGTTTGTTACACTTTACCAAAGACTCCCTACTAGTGAAGCCTTGCCTAAGGAGCTTCATCCGGTCTACTCGATGTTCATCGCAGCCCCTTCCG CGGCCAGCATTGCTTGGGAAGCAATCTATGGCGAGTTTGATGGCCCGTCGAGAACCTGCTTCTTCATTGCTCTGTTTCTCTACATTTCCCTAGTGGTTCG AATTAACTTCTTCACCGGGTTCAGGTTCTCAGTAGCGTGGTGGTCGTATACGTTCCCAATGACAACAGCATCAGTCGCAACAATAAAGTATGCAGAGCAC GTACCTTGCATCCAAAGCAAGGTCCTTGCACTGGCTCTGTCGTTCATGTCGACAGCAATGGTGGTGGTCCTGTTCGTCTCAACTCTGCTCCACGCCTTCG TTTGGAGGACACTATTTCCGAACGATCTAGCCATTGCCATAACAAAGAAGAGACTTGTTAAAGACGGCAGCAGGAAGCCGCCACTGAAGCACAGCTTCAA ACGGTGGACAAAGCAGGCACTATCCTCCAAGCATAGTTCTGACAACAAAGATTCCGGGGACGAAGAGAAGGAATCCAGTCACAAATAA
AA sequence Show only first row Show all	>Lus10006678 pacid=23152169 polypeptide=Lus10006678 locus=Lus10006678.g ID=Lus10006678.BGIv1.0 annot-version=v1.0 MEGMATTSSSTTTTTSAEMTPNRRDSHFVDIHEVNNEGEEEETEEGLGDHKKQKRQFKMRGLRNGGSSTSTHFSRQVSLETGFAVLSNSKDGGGESRKSL PRSVTSLGGFDYRVNRGGGEKKGDFSMFRTKSSLSKQNSFLPIRKGERSSEQMEYWSGQRNEAGSRNDENGNGGGGNGGDSVHNGVPAGRYFAALTGPEL DQVKDSEDILLPKDEKWPFLLRFPIGCFGICLGLSSQAVLWRALATNPATKFLHVTPYINLFLWVFAIAVLVAVGTTYICKCIFYFEAVRREYFHPVRVN FFFAPWVVCMFLAIATPPSIVPLHEKLHPAIWCVFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAILATRVGWMEAAKFLWAVGFAHY LVVFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWEAIYGEFDGPSRTCFFIALFLYISLVVRINFFTGFRFSVAWWSYTFPMTTASVATIKYAEH VPCIQSKVLALALSFMSTAMVVVLFVSTLLHAFVWRTLFPNDLAIAITKKRLVKDGSRKPPLKHSFKRWTKQALSSKHSSDNKDSGDEEKESSHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Lus10006678 [exp]	0	1
AT2G21080			unknown protein		Lus10036448 [exp]	1.0	0.9483
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006856 [exp]	1.4	0.9383
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10006146 [exp]	3.7	0.9066
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	4.2	0.9251
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10028425 [exp]	5.0	0.9123
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10021061 [exp]	7.2	0.8809
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018350 [exp]	8.9	0.9025
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	9.2	0.9180
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10042385 [exp]	9.5	0.8880
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039256 [exp]	9.5	0.8875

Compare expression of checked genes

Lus10006678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.