Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11980 411 / 5e-146 ATNUDX14, ATNUDT14 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 14, nudix hydrolase homolog 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118300 [exp] 442 / 4e-158 AT4G11980 412 / 1e-145 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 14, nudix hydrolase homolog 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10006685 pacid=23152226 polypeptide=Lus10006685 locus=Lus10006685.g ID=Lus10006685.BGIv1.0 annot-version=v1.0 ATGTCGTCGGTCACTTCAACGCCGCAATCCCTAACTCACTCCGTCACTCTACCTTCCCAGCCTGGTGACGTCGTTCAGGTCGTTGCTGCTCCCGGCGTCT CCGAATCTGAATTCCGAAACGCGATTGATAGTTCGCTGTTCAAGCAGTGGCTGCACAACTTGCAATCCGAGTCCGGGATTCTGGCCAACAGCGATTTGAT GTTGAAACAAGTGGTAGTTCAGGGAGTGGATATGTTCGGACAACGCGTTGGTTTCGTAAAGTTCAAGGCAGATATTCTTGATAAGGAAACAGGAACCAAG GTTCCAGGTATAGTGTTTGCTAGAGGACCAGCAGTGACGGTGCTAATCCTCTTGGACTGCGAAGGAAAAACATACGCTGTCTTGACTGAACAGGTTAGGG TGCCCACTGGGAAACTTGTTTTGGAATTACCAGCTGGGATGTTGGATGACGACAAGGGTGATTTCGTCGGTACAGCCGTTCGCGAGGTTGAAGAAGAAAC AGGCATTCAATTAAAGCTCGAAGACATGGTTGATCTGACAGCTTTCCTAGATCCAAGTACCGGGCAGCGAGTTATTCCATCTCCTGGAGGATGCGACGAG GAAATCAGTGTGTTCCTTTACAGAGGAAGCGTTGCCAAAGAAGTTATCACTCAGCTCCAAGGGAAAGAAACCGGCTTACGAGACCACGGAGAGATAATCA AGGTTCATGTAGTGGAGTATGAGACCCTTTGGCGCATGACAGCCGATGCCAAGGCTCTGATGGCCATTGCTCTCTATGAGATGGCCAAGAAGCATGGATT GCTGCCGCTTTGA
AA sequence Show only first row Show all	>Lus10006685 pacid=23152226 polypeptide=Lus10006685 locus=Lus10006685.g ID=Lus10006685.BGIv1.0 annot-version=v1.0 MSSVTSTPQSLTHSVTLPSQPGDVVQVVAAPGVSESEFRNAIDSSLFKQWLHNLQSESGILANSDLMLKQVVVQGVDMFGQRVGFVKFKADILDKETGTK VPGIVFARGPAVTVLILLDCEGKTYAVLTEQVRVPTGKLVLELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMVDLTAFLDPSTGQRVIPSPGGCDE EISVFLYRGSVAKEVITQLQGKETGLRDHGEIIKVHVVEYETLWRMTADAKALMAIALYEMAKKHGLLPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11980		ATNUDX14, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10006685 [exp]	0	1
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015561 [exp]	4.2	0.8731
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	6.7	0.8802
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	9.4	0.8623
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10019438 [exp]	10.4	0.8393
AT1G45207			Remorin family protein (.2)		Lus10042649 [exp]	11.8	0.8580
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	15.8	0.8758
AT5G04420			Galactose oxidase/kelch repeat...		Lus10017457 [exp]	23.5	0.8155
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10027282 [exp]	25.4	0.8004
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10004183 [exp]	25.5	0.8563
AT1G23790			Plant protein of unknown funct...		Lus10013006 [exp]	26.5	0.8483

Compare expression of checked genes

Lus10006685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.