Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12520 385 / 1e-134 ATCCS, CCS1 copper chaperone for SOD1 (.1.2.3) AT2G28190 64 / 9e-12 CZSOD2, CSD2 copper/zinc superoxide dismutase 2 (.1) AT1G08830 59 / 1e-10 CSD1 copper/zinc superoxide dismutase 1 (.1.2) AT5G18100 56 / 3e-09 CSD3 copper/zinc superoxide dismutase 3 (.1.2) AT3G56891 52 / 4e-08 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 50 / 3e-07 Heavy metal transport/detoxification superfamily protein (.1) AT3G02960 49 / 1e-06 Heavy metal transport/detoxification superfamily protein (.1) AT4G10465 44 / 3e-05 Heavy metal transport/detoxification superfamily protein (.1) AT2G36950 45 / 5e-05 Heavy metal transport/detoxification superfamily protein (.1) AT4G08570 43 / 5e-05 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007031 [exp] 542 / 0 AT1G12520 399 / 5e-140 copper chaperone for SOD1 (.1.2.3) Lus10004139 [exp] 63 / 5e-12 AT1G08830 253 / 4e-88 copper/zinc superoxide dismutase 1 (.1.2) Lus10001719 [exp] 65 / 6e-12 AT1G08830 250 / 6e-85 copper/zinc superoxide dismutase 1 (.1.2) Lus10016155 [exp] 60 / 3e-10 AT2G28190 308 / 1e-107 copper/zinc superoxide dismutase 2 (.1) Lus10010651 [exp] 60 / 7e-10 AT5G18100 228 / 9e-75 copper/zinc superoxide dismutase 3 (.1.2) Lus10021410 [exp] 57 / 2e-09 AT2G28190 306 / 5e-107 copper/zinc superoxide dismutase 2 (.1) Lus10013911 [exp] 50 / 2e-07 AT1G06330 103 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10020704 [exp] 49 / 5e-07 AT1G06330 173 / 3e-56 Heavy metal transport/detoxification superfamily protein (.1) Lus10013615 [exp] 49 / 2e-06 AT5G18100 209 / 7e-68 copper/zinc superoxide dismutase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118400 [exp] 441 / 7e-157 AT1G12520 393 / 8e-138 copper chaperone for SOD1 (.1.2.3) Potri.001G113800 [exp] 418 / 9e-148 AT1G12520 377 / 2e-131 copper chaperone for SOD1 (.1.2.3) Potri.005G044400 [exp] 65 / 1e-12 AT1G08830 266 / 5e-93 copper/zinc superoxide dismutase 1 (.1.2) Potri.004G216700 [exp] 63 / 2e-11 AT2G28190 267 / 2e-91 copper/zinc superoxide dismutase 2 (.1) Potri.013G031100 [exp] 59 / 1e-10 AT1G08830 261 / 6e-91 copper/zinc superoxide dismutase 1 (.1.2) Potri.009G005100 [exp] 59 / 5e-10 AT2G28190 252 / 2e-85 copper/zinc superoxide dismutase 2 (.1) Potri.011G065600 [exp] 55 / 5e-09 AT1G06330 159 / 7e-51 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G106500 [exp] 54 / 6e-09 AT1G06330 217 / 1e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G107500 [exp] 52 / 4e-08 AT1G06330 213 / 5e-72 Heavy metal transport/detoxification superfamily protein (.1) Potri.013G056900 [exp] 51 / 9e-08 AT5G18100 239 / 4e-82 copper/zinc superoxide dismutase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00080 [flax] [poplar] Sod_Cu Copper/zinc superoxide dismutase (SODC) PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10006686 pacid=23152191 polypeptide=Lus10006686 locus=Lus10006686.g ID=Lus10006686.BGIv1.0 annot-version=v1.0 ATGGCATTTCTGCGTTCAGTGGCTGCAACCAAGACAACAGCCACAGTAGCAGCCTCTGCTCTTCTTCCAGCTGCAAATTACCCTCTCTTCTCGCATCCGA ATTCCAACTCCCAAAACCATTCGCTTCTCTCGCTCTCTTCTTCTTCTTCTCCAGCTCGTTTTAGCCTTGTTACCCGCCTGACTCAGCCACTCTCAGCAGT CACCATGGACGCGCCCACCTCCGATCGCAATCAGCCCATCTCTCAGGAAAATGGCGACTTGCCTGATCTTCTTACTGAATTCATGGTGGATATGAGCTGT GAAGGGTGTGTGAAGTCGGTGAAGACTAAGCTTCAAGTTGTGAAAGGTGTGAAGAATGTGGAGGTGGATTTGGGAAATCAAGTGGTTAGGGTTCTTGGCT CTTCATCTGTGAAGGAGATGACTGAAGCTCTGAAGCAAACCGGTCGAAATGCCCGGTTGATCGGCCAGGGTGTACCTGAAGACTTTTTGGTGTCTGCTGC TGTTGCCGAGTTCAAGGGGCCAGATATCTTCGGCGTGGTTCGCTTTGCACAGGTGAACATGGAACTCTCATGGATTGAAGCCAATTTCAGCGGACTGTCG CCTGGGAAACACGGCTGGTCAATCAACGAGTTTGGTGACCTGACAAAAGGTGCAGCCAGCACAGGAAAGGTGTTTAATCCCACCAGTGACAAAACTGAGA ACGAGCCAGTTGGTGACCTGAGAACATTAGAAGTCGACGAGAAGGGTGAAGCCTTCTTCTCGGGTGTCAAAGAGAAGCTAAGAGTCGTTGATCTGATCGG CAGAGCAGTCGCAGTTTACAAAACCGAAGACAGATCAGATGCCGGTTTGACAGCAGCTGTAATCGCAAGAAGCGCTGGCGTCGGGGAGAACTACAAGAAG CTATGCACTTGCGACGGGACAACCATTTGGGAATCAAGTGATAGAGATTTCGTCGCAAGCAAAGTCTAA
AA sequence Show only first row Show all	>Lus10006686 pacid=23152191 polypeptide=Lus10006686 locus=Lus10006686.g ID=Lus10006686.BGIv1.0 annot-version=v1.0 MAFLRSVAATKTTATVAASALLPAANYPLFSHPNSNSQNHSLLSLSSSSSPARFSLVTRLTQPLSAVTMDAPTSDRNQPISQENGDLPDLLTEFMVDMSC EGCVKSVKTKLQVVKGVKNVEVDLGNQVVRVLGSSSVKEMTEALKQTGRNARLIGQGVPEDFLVSAAVAEFKGPDIFGVVRFAQVNMELSWIEANFSGLS PGKHGWSINEFGDLTKGAASTGKVFNPTSDKTENEPVGDLRTLEVDEKGEAFFSGVKEKLRVVDLIGRAVAVYKTEDRSDAGLTAAVIARSAGVGENYKK LCTCDGTTIWESSDRDFVASKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10006686 [exp]	0	1
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10007031 [exp]	1.4	0.9382
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	7.3	0.9249
AT3G03720		CAT4	cationic amino acid transporte...		Lus10005687 [exp]	7.3	0.9393
AT3G07440			unknown protein		Lus10020404 [exp]	7.7	0.9342
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	8.5	0.9179
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Lus10041980 [exp]	9.2	0.9176
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036817 [exp]	9.6	0.9376
AT1G58030		CAT2	cationic amino acid transporte...		Lus10000215 [exp]	11.5	0.8981
AT1G72175			RING/U-box protein with domain...		Lus10020349 [exp]	15.4	0.9171
AT1G55160			unknown protein		Lus10011503 [exp]	17.5	0.9169

Compare expression of checked genes

Lus10006686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.