Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 81 / 6e-17 F-box family protein (.1) AT4G12560 79 / 4e-16 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G16210 73 / 2e-14 F-box family protein (.1) AT1G11270 69 / 3e-13 F-box and associated interaction domains-containing protein (.1.2.3) AT1G47790 67 / 2e-12 F-box and associated interaction domains-containing protein (.1) AT4G22390 62 / 9e-11 F-box associated ubiquitination effector family protein (.1) AT3G23880 62 / 1e-10 F-box and associated interaction domains-containing protein (.1) AT2G02030 62 / 1e-10 F-box family protein (.1) AT5G10340 61 / 3e-10 F-box family protein (.1) AT1G33530 61 / 4e-10 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011015 [exp] 274 / 1e-89 AT3G06240 94 / 7e-21 F-box family protein (.1) Lus10007040 [exp] 273 / 2e-89 AT3G06240 86 / 4e-18 F-box family protein (.1) Lus10006697 [exp] 260 / 3e-84 AT4G12560 80 / 4e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10024389 [exp] 226 / 7e-72 AT4G12560 62 / 1e-10 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038606 [exp] 95 / 8e-22 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10023263 [exp] 84 / 5e-19 AT3G23880 49 / 6e-07 F-box and associated interaction domains-containing protein (.1) Lus10038541 [exp] 82 / 5e-19 AT3G52320 45 / 2e-06 F-box and associated interaction domains-containing protein (.1) Lus10037892 [exp] 87 / 6e-19 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10031020 [exp] 86 / 1e-18 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G318400 [exp] 99 / 3e-23 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.012G014300 [exp] 96 / 3e-22 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.015G013800 [exp] 94 / 1e-21 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G121200 [exp] 92 / 5e-21 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 88 / 2e-19 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006900 [exp] 86 / 9e-19 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154500 [exp] 83 / 1e-17 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G207500 [exp] 82 / 2e-17 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.003G145950 [exp] 82 / 3e-17 AT4G12560 113 / 7e-28 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.015G013500 [exp] 81 / 5e-17 AT4G10190 70 / 4e-13 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10006687 pacid=23152203 polypeptide=Lus10006687 locus=Lus10006687.g ID=Lus10006687.BGIv1.0 annot-version=v1.0 ATGAGAAGAAAGCAAAGTACGGCCACGAGCAAAATCGTAACCTTCATAAAGAAAATTGTGTGTAAGGAAAGAAGAACGGGCGAAGAATCCTCGTTCTTAC CGGAGGATATGTTGGCGGACATCTTGGTGAAACTTCCGGTCAAGACTCTGCTACGATTAAAGTGCTTGTCCACTCGCATTCATAATCTCATTGAATCTCC ATATTTTGTTGCTACACATGCCGATCATCAACGTACCGGCATCTTCTTCCTTGCTTATGGAGACATAGCTAAGGGTACTGATAATAATCACAGTGATAGT GTGTCTTCCTTCTCCTTCCCCTTTTTGAAGAACTCTAGTCGGCTCCGGTTGGAATATGTCGGATCATGCAACGGTTTAGTCTGTTTGAACATATTCGAAA CTACTACTAGCATTCTACTAAATATGGTTCTGTGGAATCCAGCCACCTCCAAGTTCTGCTTTGCTCCTCTTCCTCCTCGTCTTATGAATATCTATGATCG TAGCAGTGTGGTTTACGGATTTGGGTACGATTCAATGTCTGGTGATTACAAGTCCATTAGGATTGTCGTGCCAATCAGTGGTGTAGCAGAAGCAGAGGTT CTAAGCTGGGGGAAGAGGAGTTGGACAAAGCTCACACACGGAAAAGAATGCTGCTTAGCGGAACAAATCACTGGAATCGAATCCGATCCTGTGACAAGCA AAGGGAGAGTGAACTGGATGCTTATTACGAGTAATCCAGGTACGTTGCTATCGTTCAAACTAGGAGAAGAGCAATTCGAAAGGATATCGCCGCCACCAGA AGACTTCGATACTAGTTATGCCAAGGCATGTGTTCGGAAAGGGTCACTTGCCATGATGGTTATGAAACCCGGGGATACTGCTCTTTGGTTGTTTAATGAT GATGAAGATCGAGATCATTCACGTTGTTAG
AA sequence Show only first row Show all	>Lus10006687 pacid=23152203 polypeptide=Lus10006687 locus=Lus10006687.g ID=Lus10006687.BGIv1.0 annot-version=v1.0 MRRKQSTATSKIVTFIKKIVCKERRTGEESSFLPEDMLADILVKLPVKTLLRLKCLSTRIHNLIESPYFVATHADHQRTGIFFLAYGDIAKGTDNNHSDS VSSFSFPFLKNSSRLRLEYVGSCNGLVCLNIFETTTSILLNMVLWNPATSKFCFAPLPPRLMNIYDRSSVVYGFGYDSMSGDYKSIRIVVPISGVAEAEV LSWGKRSWTKLTHGKECCLAEQITGIESDPVTSKGRVNWMLITSNPGTLLSFKLGEEQFERISPPPEDFDTSYAKACVRKGSLAMMVMKPGDTALWLFND DEDRDHSRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10006687 [exp]	0	1
AT3G23880			F-box and associated interacti...		Lus10010910 [exp]	4.6	0.9470
AT3G21120			F-box and associated interacti...		Lus10040800 [exp]	6.1	0.8131
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10012571 [exp]	8.1	0.9104
AT1G73750			Uncharacterised conserved prot...		Lus10007966 [exp]	9.9	0.9079
					Lus10006661 [exp]	11.7	0.9062
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10009378 [exp]	13.0	0.9062
					Lus10003840 [exp]	14.3	0.9062
					Lus10022573 [exp]	15.4	0.9062
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	16.5	0.9062
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10038264 [exp]	17.5	0.9062

Compare expression of checked genes

Lus10006687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.