Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58180 465 / 3e-166 ARM repeat superfamily protein (.1) AT3G62530 127 / 4e-35 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007032 [exp] 612 / 0 AT3G58180 484 / 5e-174 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G041400 [exp] 486 / 2e-174 AT3G58180 497 / 3e-179 ARM repeat superfamily protein (.1) Potri.005G221700 [exp] 473 / 3e-169 AT3G58180 458 / 1e-163 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03130 [flax] [poplar] HEAT_PBS PBS lyase HEAT-like repeat
Representative CDS sequence Show only first row Show all	>Lus10006688 pacid=23152178 polypeptide=Lus10006688 locus=Lus10006688.g ID=Lus10006688.BGIv1.0 annot-version=v1.0 ATGGGTTCTCTGAGCGATACAACCGTCAATGGATCTTCGATAACCATGGAGCAGTTTCTGTGTGAACGATTAGTCGACTCTTCCCAGCCGATATCTGAAA GGTTCCGTGTCCTGTTTTCTCTTCGCAATCTCAAAGGCTCTGGACCTCGCACTGCTTTGATTCAAGCAACGAGGGACTCCTCGAATCTATTGGCGCACGA GGCTGCATTTGCTTTAGGCCAAATGCAGGATTCCGAGGCTATCCCAGCTTTGGAGGCGGTTCTAAACGATCTTTCTTTGCATCCCATCGTTCGACATGAG GCTGCAGAAGCTCTTGGAGCAATTGGTTTAAAGAGTAATGTGCCACTTCTGGAGAGAAGTTTGGCTGTAGATCCAGCTCAGGAAGTTAGAGAAACTTGTG AGCTGGCTCTGAACCGGATTAAGGAGATGAATACTTCAAATGGTGATTATCAATCACCCGCAATGGATAAGTCACCATTTTTATCAGTTGATCCAGCTGG TGCAGCATCGTCGTGTTCTTCTGTTGATGAGCTAAGGGAAGTTCTTCTCGATGAAGAAAAACACATGTATGAACGATATGCTGCTCTTTTCGCCCTACGT AACAACAGTGGGGATGAAGCTGTTACTGCAATAGTAGATTCGTTGCAGTCTAAGAGTGCCCTGCTAAAGCACGAGGTTGCATACGTTTTGGGCCAGTTAC AAAACAAAGCTGCATCGGCTGCACTTAGTTCAGTACTTAGAGATGTAAATGAACACCCAATGGTTCGGCATGAAGCTGCCGAAGCTCTTGGCTCTATTGC TGATGATAAAAGCATTGCACTTCTAGAGGAATTCTCCAAGGACCCCGAGCCTATCGTCTCGGAGAGCTGTGAAGTTGCCCTAAGTATGCTGGAATACGAA AGATCCGGGAAATCCTTCGAGTACCTCTTCATGCAAGATCCATTAGCACAGGCGTAG
AA sequence Show only first row Show all	>Lus10006688 pacid=23152178 polypeptide=Lus10006688 locus=Lus10006688.g ID=Lus10006688.BGIv1.0 annot-version=v1.0 MGSLSDTTVNGSSITMEQFLCERLVDSSQPISERFRVLFSLRNLKGSGPRTALIQATRDSSNLLAHEAAFALGQMQDSEAIPALEAVLNDLSLHPIVRHE AAEALGAIGLKSNVPLLERSLAVDPAQEVRETCELALNRIKEMNTSNGDYQSPAMDKSPFLSVDPAGAASSCSSVDELREVLLDEEKHMYERYAALFALR NNSGDEAVTAIVDSLQSKSALLKHEVAYVLGQLQNKAASAALSSVLRDVNEHPMVRHEAAEALGSIADDKSIALLEEFSKDPEPIVSESCEVALSMLEYE RSGKSFEYLFMQDPLAQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58180			ARM repeat superfamily protein...		Lus10006688 [exp]	0	1
AT5G09380			RNA polymerase III RPC4 (.1)		Lus10019022 [exp]	2.6	0.9297
AT1G22520			Domain of unknown function (DU...		Lus10009454 [exp]	4.5	0.9260
AT4G39900			unknown protein		Lus10024045 [exp]	5.5	0.9337
AT1G15860			Domain of unknown function (DU...		Lus10019598 [exp]	8.1	0.9090
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10037482 [exp]	8.8	0.9298
AT4G32690		ATGLB3, GLB3	ARABIDOPSIS HEMOGLOBIN 3, hemo...		Lus10022120 [exp]	8.9	0.9310
AT5G25940			early nodulin-related (.1)		Lus10019434 [exp]	9.8	0.9313
AT3G58180			ARM repeat superfamily protein...		Lus10007032 [exp]	11.8	0.9081
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10003919 [exp]	11.9	0.9316
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Lus10002121 [exp]	16.4	0.9044

Compare expression of checked genes

Lus10006688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.