Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 548 / 0 ARA12 Subtilase family protein (.1) AT2G05920 548 / 0 Subtilase family protein (.1) AT1G04110 522 / 1e-175 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT4G34980 518 / 5e-174 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 518 / 6e-174 Subtilase family protein (.1) AT3G14240 512 / 1e-171 Subtilase family protein (.1) AT1G01900 511 / 3e-171 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G51750 504 / 1e-168 ATSBT1.3 subtilase 1.3 (.1) AT5G59810 456 / 1e-149 ATSBT5.4 Subtilase family protein (.1) AT2G04160 444 / 2e-145 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007033 [exp] 1374 / 0 AT5G67360 551 / 0.0 Subtilase family protein (.1) Lus10008919 [exp] 963 / 0 AT5G67360 561 / 0.0 Subtilase family protein (.1) Lus10028895 [exp] 946 / 0 AT5G67360 566 / 0.0 Subtilase family protein (.1) Lus10028893 [exp] 823 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10007036 [exp] 776 / 0 AT5G67360 564 / 0.0 Subtilase family protein (.1) Lus10007044 [exp] 774 / 0 AT1G04110 590 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006303 [exp] 768 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 757 / 0 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 751 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118700 [exp] 811 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 805 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 802 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 785 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 782 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 599 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.006G141200 [exp] 548 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.002G256300 [exp] 537 / 0 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.005G145300 [exp] 528 / 6e-179 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 530 / 2e-178 AT5G67360 966 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10006689 pacid=23152194 polypeptide=Lus10006689 locus=Lus10006689.g ID=Lus10006689.BGIv1.0 annot-version=v1.0 ATGACGGCAGTAGCCGCCTTAGCGCTGTTCATGATCAGCCTCGCTATAGTCCCATCACCGTGCTTCTCCGAGTCGGAACGAATGGACACATACATCGTCT TCCTGAACAAACCTGACAGCAGTCTATCCTCGTTCGGAGACGAGGATCTCGAGACGTGGTACAGTACATTCCTTCCTGACACCACAACGGCAAGTTCGTC GGAGGAGAAGCAGCAACGGATGGTGCATTCGTACTGCAATGTCGCAACAGGATTCGCTGCCAGGCTGACGGAGGAGGAAGTGAAGGAAATGGCGAAGAAG GAAGGGTTCATCTCGGCTCATAAGGAAAAGATTTACTCTCTCCACACTACTAGGACTCCTACGTTCTTGGGATTGAAGCCGGATGTAGGCTTGTGGAACA TTTCGAACGGAAGTAACCTTGGCGGTAAAGGAGTAATCATTGGCGTTCTTGATACAGGCATAGCACCTGACCATCCTTCCTTCAGTGACCACAACATGCC ACCTCCTCCTGCGAAATGGAAGGGGAAATGCCAGCTACCAAAGTGCAACAACAAGCTGATCGGAGCACGAAATCTCGTCGACAACTCTTTCGCAAACGAC GCTGAAGGCCACGGGACTCACACTTCCAGCACGGCAGCAGGAAATCCGATCCTGAAGGCGAATGCTTTCGGGCAAGCTGAAGGCACCGCGGTAGGAATGG CACCGTTGGCCCACATTGCAATGTACAAAGTCTGTGATGCGGACGGTTGCCCCGGCGGGACCATACTAGCCGGACTAGACAAAGCGGTAGCCGACGGTGT TGATGTGCTCTCGCTCTCGATCGGTGGTCCTTCAGAACCGTTTGTGGATGACCCGATTGCGGTAGCTGCATTCGGTGCTATCCAGAAGGGTATTTTCGTC AGCTGTTCGGTTGGAAATGATGGTCCTATAAGCGGGTCATCCTCAAACGAGGCGCCATGGATTCTAACCGTGGGAGCTAGCACCATCGACCGGCGGATTA AGGCCACCGTTCTTCTTGGCGACAACGTTACCCTGGAAGGCGAATCCCTGTTTCAGGACAGGCATTGGGGATCCCAACTTCTGACGCTTGTGTACCCAGG GGAAAATGGTGATTTTACATCAAAATTCTGCGCTCCGGGATCGTTGGATCCGAAGTTTGTTAAGGGGAAGATTGTGCTTTGCGAGAGAGGAGGCAAGATT GGAAGGATTCAGAAGGGTCAGGAAGTTAAAGACAGTGGCGGAATCGCCATGATTCTGATGAATGATCAACCGAGCGGTTACGATACCTTGGCAGATGCTC ATGTCCTGCCGGCTTCCCATGTCAGCTTCGTCTCGGGCGAGAAGATCAAAGGTTACATAAACTCGACTAAATCAGAAGCCAAAGCTACAATCTTTTTCCA AGGAACTGTAGTCGGAAACAACCCGAACGCTCCCCAAGTCGCTTCCTTCTCCTCCAGGGGACCTAACACTATCAGCCCAGGAATCCTGAAACCTGACATT ATAGGCCCCGGAGTCAACATCTTAGCAGCTTGGCCCTTCTCGATCGACAACTCGAGCAGCGTTCCCTTCAACATGATCTCAGGAACATCAATGTCCTGCC CACACCTAAGCGGGATCGCTGCTTTACTAAAAAGCGCCCACCCTGACTGGTCCCCTGCCGCGATCAAATCCGCCATGATGACCACCACCTACCTCAAAAA CCTCGGTGGGTCCCCTATCCTCAACGAACAGCTTTCTGAAGCGAACCTATTCGATATTGGGGCAGGACATGTCAACCCAGTAGCAGCTGCCAATCCCGGG CTAGTATACGATCTAAAACCTGACGACTACATTCCTTACCTATGCGGGTTGAAATACAAGGACACGGAGATCTCCGGGGTCATCGGGAGGAAGGCGCATT GCGGGAACTCGAGCATTCCTGAAGCTCAGCTTAACTACCCTTCGTTCGCGATCAGGTTAGGGTCTAACCCAGTGAGTTATTCGAGAACTGTGACGAACGT TGGGAAGGCGAACTCCGTCTACGTAGCGAAAGTTGTGGCACCGAAAGGGGTTGGTGTCAAGGTGAATCCTGACAGGATTTCTTTCAGGAGTTTGAACCAG AAGGCTAGTTTTACTGTGACGTTTGCCAGCCAGGGTGCTGGCTATTCTGCCGACCCTTACTCGCATGGGTACTTGTACTGGTTGAGTACTACTGGTGGAT ATGTTGTCAGGAGTCCGATTGCTGTTCTATCTGAGTAA
AA sequence Show only first row Show all	>Lus10006689 pacid=23152194 polypeptide=Lus10006689 locus=Lus10006689.g ID=Lus10006689.BGIv1.0 annot-version=v1.0 MTAVAALALFMISLAIVPSPCFSESERMDTYIVFLNKPDSSLSSFGDEDLETWYSTFLPDTTTASSSEEKQQRMVHSYCNVATGFAARLTEEEVKEMAKK EGFISAHKEKIYSLHTTRTPTFLGLKPDVGLWNISNGSNLGGKGVIIGVLDTGIAPDHPSFSDHNMPPPPAKWKGKCQLPKCNNKLIGARNLVDNSFAND AEGHGTHTSSTAAGNPILKANAFGQAEGTAVGMAPLAHIAMYKVCDADGCPGGTILAGLDKAVADGVDVLSLSIGGPSEPFVDDPIAVAAFGAIQKGIFV SCSVGNDGPISGSSSNEAPWILTVGASTIDRRIKATVLLGDNVTLEGESLFQDRHWGSQLLTLVYPGENGDFTSKFCAPGSLDPKFVKGKIVLCERGGKI GRIQKGQEVKDSGGIAMILMNDQPSGYDTLADAHVLPASHVSFVSGEKIKGYINSTKSEAKATIFFQGTVVGNNPNAPQVASFSSRGPNTISPGILKPDI IGPGVNILAAWPFSIDNSSSVPFNMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAMMTTTYLKNLGGSPILNEQLSEANLFDIGAGHVNPVAAANPG LVYDLKPDDYIPYLCGLKYKDTEISGVIGRKAHCGNSSIPEAQLNYPSFAIRLGSNPVSYSRTVTNVGKANSVYVAKVVAPKGVGVKVNPDRISFRSLNQ KASFTVTFASQGAGYSADPYSHGYLYWLSTTGGYVVRSPIAVLSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05920			Subtilase family protein (.1)		Lus10006689 [exp]	0	1
AT5G19890			Peroxidase superfamily protein...		Lus10026748 [exp]	1.7	0.9511
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	2.0	0.9620
AT1G16160		WAKL5	wall associated kinase-like 5 ...		Lus10013143 [exp]	2.4	0.9440
AT3G26880			Plant self-incompatibility pro...		Lus10038164 [exp]	2.6	0.9439
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10025903 [exp]	3.2	0.9595
					Lus10041745 [exp]	4.9	0.9424
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Lus10009328 [exp]	7.1	0.9361
AT1G62935			unknown protein		Lus10009297 [exp]	7.2	0.9257
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10040118 [exp]	7.3	0.9414
AT5G08460			GDSL-like Lipase/Acylhydrolase...		Lus10028685 [exp]	7.4	0.9323

Compare expression of checked genes

Lus10006689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.