Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11650 288 / 8e-99 ATOSM34 osmotin 34 (.1) AT1G77700 163 / 1e-48 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 159 / 4e-48 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G75050 157 / 2e-47 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75030 154 / 2e-46 ATLP-3 thaumatin-like protein 3 (.1) AT4G38660 151 / 4e-44 Pathogenesis-related thaumatin superfamily protein (.1.2) AT5G24620 147 / 6e-42 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G19320 142 / 8e-42 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 139 / 9e-40 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 137 / 1e-39 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007034 [exp] 449 / 2e-162 AT4G11650 293 / 5e-101 osmotin 34 (.1) Lus10006302 [exp] 368 / 2e-130 AT4G11650 294 / 3e-101 osmotin 34 (.1) Lus10017170 [exp] 299 / 2e-103 AT4G11650 251 / 2e-84 osmotin 34 (.1) Lus10024511 [exp] 285 / 3e-97 AT4G11650 315 / 5e-109 osmotin 34 (.1) Lus10023897 [exp] 168 / 1e-51 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10025055 [exp] 161 / 1e-48 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025629 [exp] 154 / 7e-45 AT1G77700 377 / 4e-130 Pathogenesis-related thaumatin superfamily protein (.1) Lus10032726 [exp] 149 / 3e-44 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10028447 [exp] 146 / 2e-42 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G107800 [exp] 328 / 4e-115 AT4G11650 291 / 1e-100 osmotin 34 (.1) Potri.001G107950 [exp] 325 / 1e-113 AT4G11650 287 / 6e-99 osmotin 34 (.1) Potri.001G107600 [exp] 293 / 4e-101 AT4G11650 356 / 1e-125 osmotin 34 (.1) Potri.001G102400 [exp] 292 / 2e-100 AT4G11650 360 / 2e-127 osmotin 34 (.1) Potri.018G096063 [exp] 273 / 3e-93 AT4G11650 314 / 2e-109 osmotin 34 (.1) Potri.002G087100 [exp] 159 / 5e-48 AT1G77700 384 / 2e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G173900 [exp] 158 / 2e-47 AT1G77700 316 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1) Potri.004G173200 [exp] 154 / 3e-45 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.012G004800 [exp] 153 / 5e-45 AT5G24620 358 / 1e-122 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.001G222100 [exp] 150 / 9e-45 AT1G75800 283 / 2e-95 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10006690 pacid=23152199 polypeptide=Lus10006690 locus=Lus10006690.g ID=Lus10006690.BGIv1.0 annot-version=v1.0 ATGTCTACCCTTTCCTTCAAAACCATCTCACTCGCCGTCTTCGCGACATTCTTCACCGTCTTGACCACCTCAACCAACGCAGCCCGTTTCTCCATAACAA ACAACTGCCCATACACGGTATGGGCAGCATCCGTCCCCGTGGGGGGAGGCCGCCAGCTGAATAGGGGCCAGACGTGGACGGTCAACGCTCCCTCGGGGAC CAAAGCAGCCAGGATATGGGCCAGGACCGGCTGCAGGTTCGATGCATCCGGCAGGGGGAAGTGTCAGACCGGGGACTGCAGCGGCCTCCTGCGGTGCAAG GGCTACGGCGCAGCCCCCAACACTCTGGCGGAGTACGCGATAAACCAGTTTTCGAAGCTGGATTTCATTGACATCTCGGTGATAGACGGGTTCAACGTCC CGATGGAGTTCAGCTCGGTCTCCAAGGGTTGCAGGAGGGTGATCAAGTGCGCGACACCGACCATCATGAGCCAGTGCCCCAAGGAGCTGAGGGTCCCCGG AGGGTGTAACGGGCCGTGTCCCGTGTTTAAGACGGATGAGCATTGTTGCAACTCCGGGAAGTGCGGGGCGACGAAGTACTCGAGGTTCTTCAAGCAGAGG TGCCCTGATGCTTATAGTTACCCTAAGGACGATCCGACCAGCACTTTTACTTGCCCTACTGGGACTGACTACAAGGTTGTCTTCTGTCCTCGATCGAGGT TGGTTAGTGAAGAATAA
AA sequence Show only first row Show all	>Lus10006690 pacid=23152199 polypeptide=Lus10006690 locus=Lus10006690.g ID=Lus10006690.BGIv1.0 annot-version=v1.0 MSTLSFKTISLAVFATFFTVLTTSTNAARFSITNNCPYTVWAASVPVGGGRQLNRGQTWTVNAPSGTKAARIWARTGCRFDASGRGKCQTGDCSGLLRCK GYGAAPNTLAEYAINQFSKLDFIDISVIDGFNVPMEFSSVSKGCRRVIKCATPTIMSQCPKELRVPGGCNGPCPVFKTDEHCCNSGKCGATKYSRFFKQR CPDAYSYPKDDPTSTFTCPTGTDYKVVFCPRSRLVSEE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006690 [exp]	0	1
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10035621 [exp]	1.0	0.9630
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10007034 [exp]	1.4	0.9445
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026235 [exp]	1.7	0.9421
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10003226 [exp]	10.5	0.9026
AT5G50120			Transducin/WD40 repeat-like su...		Lus10043466 [exp]	10.5	0.8843
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	10.6	0.9255
AT1G16310			Cation efflux family protein (...		Lus10000061 [exp]	12.2	0.9187
AT2G43590			Chitinase family protein (.1)		Lus10035624 [exp]	15.8	0.9040
AT1G79700	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041618 [exp]	17.3	0.9069
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10007778 [exp]	17.5	0.8981

Compare expression of checked genes

Lus10006690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.