Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 138 / 2e-37 O-methyltransferase family protein (.1) AT5G54160 137 / 4e-37 ATOMT1 O-methyltransferase 1 (.1) AT4G35150 134 / 2e-36 O-methyltransferase family protein (.1) AT1G51990 116 / 2e-29 O-methyltransferase family protein (.1.2) AT3G53140 105 / 2e-25 O-methyltransferase family protein (.1) AT1G77520 100 / 3e-23 O-methyltransferase family protein (.1) AT1G21110 90 / 8e-20 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1) AT1G21100 88 / 3e-19 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G21130 88 / 4e-19 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G21120 87 / 7e-19 IGMT2 indole glucosinolate O-methyltransferase 2, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006692 [exp] 550 / 0 AT4G35160 152 / 2e-42 O-methyltransferase family protein (.1) Lus10007035 [exp] 486 / 3e-173 AT4G35160 137 / 7e-38 O-methyltransferase family protein (.1) Lus10032304 [exp] 377 / 3e-130 AT4G35160 170 / 2e-49 O-methyltransferase family protein (.1) Lus10038331 [exp] 379 / 2e-128 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1) Lus10033656 [exp] 286 / 3e-94 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 284 / 1e-93 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10018628 [exp] 267 / 5e-87 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10018629 [exp] 257 / 3e-83 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10017691 [exp] 245 / 3e-78 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093100 [exp] 294 / 1e-97 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 287 / 1e-94 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 285 / 4e-94 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 284 / 7e-94 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 280 / 2e-92 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 273 / 2e-89 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 273 / 3e-89 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 261 / 6e-85 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 259 / 4e-84 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 236 / 7e-75 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10006691 pacid=23152214 polypeptide=Lus10006691 locus=Lus10006691.g ID=Lus10006691.BGIv1.0 annot-version=v1.0 ATGGATGCAACAACAATTGTCGAGCTTCTCGATGGCCATCCTCGAGTTTGGGATCACTTACTAGGCTATATAAACTCGATGACCCTCCAATGTGCAGTTG AGCTGGAGATCGCAGATGCGATCCACAGTCACGGTCAGCCCATCCCATTAGATGGGCTAGCCACGGCTCTCAAAATCCCCCCAGCCAAGACCCCGTTCCT CTCGCGCCTCATGCGCATGCTGGTCCACATGGGCTACTTCACACTACAGAAGCTAGAAGCAGAAGAGGAATGCCACCGTTACTGGGTGGCACCCCTCTCC CGTCTGTTGATGAAGGAAAACCCATTCAACCTCAGGTCGCTCATCATCGCCGGGGTCAGCCATCATGTGGTGGATCCTTGGCGGAACATGAGCGCTTGGT TACGAGCCACCAACAAAGACGCTGACGCAACCAATGTTTTTGCTTTTGCTCACGGGGGCAAGAAGGCATATGAGTTCTTTTCTGAGAATCCGGAGTACGG CCAGTTGTTTTCCGAAGGGATGGCGGCGGACAGCTGGCTGTTCAGCAGAGCCCTAGTGGCCAAGTGCAAAGAAGCATTCGAAGGCTTGAACTCGCTTGTC GACGTCGGGGGTGGTACCGGGGACACGGCTAAGATTATTGTTGAGGCCTTCCCTGACATCCGCTGCACTGTGTTTGATCTCCCTCACGTGGTCGATGGTC CGAAACAAACCCACCCTAATCTTGACTACCAAAGCGGCAATATGTTTACGGACGATATTCCTCATGCTGATGCTCTACTCTTCAAGTGGATGTTACTGGA TTGGTCGGACGAACAGGTCCTGGAAATGCTGAAGCAGTGCAAGAAAGCGTTGAGTAAGAAGGGTGCGAAGAAGGGGAAGCTGATGATCGCAGACCACGTG CTGGATCACTCGAGCTGCAACGACAGCAACTCGATGAGAACATCCTTGTTGGTGGACATGTTAAACATGTCGTATCTCGAAGGTACTGTGAGAACTGAGA AACAATGGGCGAAGCTCTTCTCCAATGCCGGCTTCACCAGCTACACCATAACTCCCGTTGGTGGCCTGCGAGTCCTCATCCAAGTCAACCCTTAA
AA sequence Show only first row Show all	>Lus10006691 pacid=23152214 polypeptide=Lus10006691 locus=Lus10006691.g ID=Lus10006691.BGIv1.0 annot-version=v1.0 MDATTIVELLDGHPRVWDHLLGYINSMTLQCAVELEIADAIHSHGQPIPLDGLATALKIPPAKTPFLSRLMRMLVHMGYFTLQKLEAEEECHRYWVAPLS RLLMKENPFNLRSLIIAGVSHHVVDPWRNMSAWLRATNKDADATNVFAFAHGGKKAYEFFSENPEYGQLFSEGMAADSWLFSRALVAKCKEAFEGLNSLV DVGGGTGDTAKIIVEAFPDIRCTVFDLPHVVDGPKQTHPNLDYQSGNMFTDDIPHADALLFKWMLLDWSDEQVLEMLKQCKKALSKKGAKKGKLMIADHV LDHSSCNDSNSMRTSLLVDMLNMSYLEGTVRTEKQWAKLFSNAGFTSYTITPVGGLRVLIQVNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35150			O-methyltransferase family pro...		Lus10006691 [exp]	0	1
AT4G33840			Glycosyl hydrolase family 10 p...		Lus10014642 [exp]	1.0	0.9421
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035190 [exp]	2.6	0.8768
AT5G05180			unknown protein		Lus10034251 [exp]	4.0	0.9166
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	4.9	0.9068
AT5G05180			unknown protein		Lus10029012 [exp]	5.5	0.8808
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	6.6	0.9030
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10041210 [exp]	7.4	0.8898
					Lus10018215 [exp]	8.0	0.8759
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10038203 [exp]	9.2	0.8627
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	10.4	0.8739

Compare expression of checked genes

Lus10006691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.