Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 152 / 2e-42 O-methyltransferase family protein (.1) AT4G35150 150 / 2e-42 O-methyltransferase family protein (.1) AT5G54160 134 / 4e-36 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 116 / 3e-29 O-methyltransferase family protein (.1) AT1G51990 110 / 2e-27 O-methyltransferase family protein (.1.2) AT3G53140 108 / 2e-26 O-methyltransferase family protein (.1) AT1G63140 104 / 6e-25 O-methyltransferase family protein (.1.2) AT1G21130 102 / 2e-24 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G77530 101 / 5e-24 O-methyltransferase family protein (.1) AT1G21100 100 / 2e-23 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007035 [exp] 654 / 0 AT4G35160 137 / 7e-38 O-methyltransferase family protein (.1) Lus10006691 [exp] 574 / 0 AT4G35150 150 / 1e-41 O-methyltransferase family protein (.1) Lus10038331 [exp] 407 / 2e-139 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1) Lus10032304 [exp] 388 / 1e-134 AT4G35160 170 / 2e-49 O-methyltransferase family protein (.1) Lus10018628 [exp] 300 / 1e-99 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10033656 [exp] 291 / 3e-96 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 286 / 2e-94 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10018629 [exp] 283 / 4e-93 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10001510 [exp] 256 / 1e-82 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093100 [exp] 320 / 8e-108 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 315 / 4e-106 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 315 / 1e-105 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 314 / 2e-105 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 301 / 1e-100 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 300 / 4e-100 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 298 / 4e-99 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 295 / 4e-98 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 274 / 8e-90 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 266 / 2e-86 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10006692 pacid=23152190 polypeptide=Lus10006692 locus=Lus10006692.g ID=Lus10006692.BGIv1.0 annot-version=v1.0 ATGGACGCAACCACTGCGATCGAGCTACTCGATGCCCAGCCCCGAGTTTGGGATCACTTCCTCGGCTACATCAACTCGATGACCCTCCAATGTGCACTCG AGCTAGAAATTGCTGACGTGATCCACAACCACGGCCGGCCCATGCCCTTGGCTGAGCTGGCCACGGCTCTAAAAATCTCCCCGGACAAGGCCCAGCTCCT CTCGCGCCTCATGCGCATGCTAGTCCACCTGGGCTACTTCACGCAACAAAAAGGAGGAGAAATAGGGTGCCATTACTACTGGGTGGCACCCCTCTCCCGC TTGTTGTTGAAGGAAAACCCATTCAACGCCAGGTCGCTCACCTTTTGTTCGGTCCACCAGCATCTGGTGGACCCCTGGCGACAAATGAGCGTCTGGTTAC GAGCCACCAATAAGGACGGCAAAGATGCCCCAAACGCCTTTGCTTTTGCTCACGAGGGAAAGAAGGTGTACGAGGTTTGCTCTGAGGACCCACCGTTCAG CCAGCTATTCTCCGAAGGGATGGCGGGGGACAGCTGGCTGTTTAGCAGGGCCCTGGTGGCGAAGTGCAAAGATGCATTCCAAGAATTGAGCTCGCTTGTC GATGTCGGGGGCGGTACGGGGAACACATCTAAGGTTATTGCAGAGGCCTTCCCGGACATGCACTGCACCGTGTTCGATCTCCCTCATGTGGTCTCCGGGC CGAAACAAACCCATCACAATCTTCACTACGAAAGCGGCAACATGTTTACCGACGATATTCCTCACGCTGATGCCGTGCTCTTCAAGTGGGTGCTATGCGA CTGGCCGGACGAACCGGTCCTGAAAATGCTGAAGCAGTGCAAGAAAGCGTTGACCAAGAACGGAGTGAAGGGGAAACTGATGATCGCAGACCACGTGCTG GGTCACGAGAGTTGCAACGACAGCAGCTCGATGGGAACATCTCTGGTGCTCGACATGCTGTTCATGTCGTTTCTCGAAGGTTCTCTGAGGACCGAGGAAC AGTGGGCGAAGCTCTTCTCCGATGCCGGCTTCACCAGCTACACCATAACTCCCGTTGGTGGCCTGCGAGTCCTCATCCAAGTCTACCCTTAA
AA sequence Show only first row Show all	>Lus10006692 pacid=23152190 polypeptide=Lus10006692 locus=Lus10006692.g ID=Lus10006692.BGIv1.0 annot-version=v1.0 MDATTAIELLDAQPRVWDHFLGYINSMTLQCALELEIADVIHNHGRPMPLAELATALKISPDKAQLLSRLMRMLVHLGYFTQQKGGEIGCHYYWVAPLSR LLLKENPFNARSLTFCSVHQHLVDPWRQMSVWLRATNKDGKDAPNAFAFAHEGKKVYEVCSEDPPFSQLFSEGMAGDSWLFSRALVAKCKDAFQELSSLV DVGGGTGNTSKVIAEAFPDMHCTVFDLPHVVSGPKQTHHNLHYESGNMFTDDIPHADAVLFKWVLCDWPDEPVLKMLKQCKKALTKNGVKGKLMIADHVL GHESCNDSSSMGTSLVLDMLFMSFLEGSLRTEEQWAKLFSDAGFTSYTITPVGGLRVLIQVYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10006692 [exp]	0	1
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10029395 [exp]	1.0	0.9765
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003147 [exp]	6.5	0.9679
AT1G14550			Peroxidase superfamily protein...		Lus10009900 [exp]	10.2	0.9702
					Lus10022008 [exp]	11.5	0.9567
AT1G14540			Peroxidase superfamily protein...		Lus10009904 [exp]	12.8	0.9652
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10039416 [exp]	15.3	0.9385
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10012724 [exp]	17.0	0.9660
AT1G14540			Peroxidase superfamily protein...		Lus10000003 [exp]	21.2	0.9543
AT3G19615			unknown protein		Lus10031599 [exp]	23.9	0.9548
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013921 [exp]	24.9	0.9298

Compare expression of checked genes

Lus10006692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.