Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 496 / 3e-166 ARA12 Subtilase family protein (.1) AT1G04110 488 / 6e-163 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G05920 485 / 3e-162 Subtilase family protein (.1) AT3G14240 474 / 1e-157 Subtilase family protein (.1) AT3G14067 466 / 2e-154 Subtilase family protein (.1) AT1G01900 462 / 3e-153 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT4G34980 454 / 5e-150 SLP2 subtilisin-like serine protease 2 (.1) AT5G51750 428 / 8e-140 ATSBT1.3 subtilase 1.3 (.1) AT2G04160 420 / 7e-137 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 405 / 3e-131 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007036 [exp] 1184 / 0 AT5G67360 564 / 0.0 Subtilase family protein (.1) Lus10028893 [exp] 936 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10028895 [exp] 755 / 0 AT5G67360 566 / 0.0 Subtilase family protein (.1) Lus10008919 [exp] 745 / 0 AT5G67360 561 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 700 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 698 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10007033 [exp] 696 / 0 AT5G67360 551 / 0.0 Subtilase family protein (.1) Lus10006689 [exp] 696 / 0 AT2G05920 563 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 692 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118700 [exp] 741 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 734 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 731 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 710 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 704 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 544 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 485 / 7e-162 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G067000 [exp] 476 / 2e-158 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 474 / 8e-158 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.009G133400 [exp] 473 / 3e-157 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10006693 pacid=23152229 polypeptide=Lus10006693 locus=Lus10006693.g ID=Lus10006693.BGIv1.0 annot-version=v1.0 ATGGTCCACTCTTACCACCACGTGGCGACAGGGTTCGCAGCCAGACTCACACGGGCCGAACTCGAGTCGATGGAGGGGAAGCGAGGGTTCCTGTCAGCGC GTCCCGAGAAGGTTCTGAATCTTCAGACAACTTACACTCCCAAGTTCCTTGGTCTCCAACGGAATTCGGGGTTGTGGAACGGTTCGGGGTACGGGAAAGG AGTGGTGGTTGGAGTTTTCGATACCGGAGTGACGGCTGAGCATCCTTCGTTTAGTGACGAAGGGATGCCTCCGCCGCCTGCAAAATGGAGAGGGAGATGT GAACCGAAGGAGGTTTGTAATAATAAGGTTATTGGTGCTAGGAATCTTGCGGCGAAAGGGGATTCCGTCGAGGATGAGGAAGGCCACGGGACTCACACGG CTAGCACCGCTGCTGGAAGTGCAGTTTCAGGTGCAAATGCAATGGGTCAAGGGTTCGGAACTGCGGTTGGGATGGCACCGATGGCTCACTTGGCCATATA CAAAGTGTGTGGTGGTCAAAAGGGCTGTACAGACACTGCCATAATGGCAGCATTCGATGCCGCAGTCGAGGACGGCGTCGATGTTCTCTCAATCTCGCTC GGTGGGGACTCCGCTCCGTTTTTCAACGACGGAATCGCCATAGGTGCATTCGGGGCAATGAAAAACGGAATATTCGTGAGCTGTTCAGCTGGGAACGAGG GTCCCGCAGCTAGCTCGTTGTCAAACGAAGCGCCGTGGATGCTAACAGTTGGAGCTAGCACCGTTGACAGACAAATAAAGTCAACGGTCCTGCTCGGGAA CGGGAAAGGGTTCGACGGTCAAACCCTTTTCCAACCAAAAGATTCCGCCTCTTCGAAAATGCTGCCGCTTGTCTATGCAGGGGGAGCCTCTTCTAATCAC AACTCATCGGCCGTGTACTGCGCACCCGGATCGCTCTCCGAGGTTGATGTCAAAGGCAAAGTGGTCGTGTGCGAGTCAGGAGGCAAAATCAAAAGGATTG ACAAAGGAGTCGAAGTCAAGAACAACGGTGGATTTGGAATGGTGATGATCAACAGCAAAGCTGCCGGGTTCACGACTTTAGCTGATGCGCACCAGATTCC GGCTTCGCATGTCAGTTACGAAGCCGGAGTGTCGATTAAGGAGTACATCAAATCCACAGGATCTCCGACTGCGACGATAGTGTTCAAAGGGACGGTGTTC GGTGACCAAGTTGAGGCGCCTCAAGTTGCTTCATTTTCGTCGCGAGGGCCTAGCAAGGCGAGTCCGGGGATCATGAAACCGGACTTGATCGGCCCTGGTG TTAGCACTTTGGCGGCTTGGCCGACTCTTGTGGAAGAGGACGGTATCGTCAAGGGTGGTACTTCTGATCAGCCGAAATTCAACATGATTTCTGGAACATC GATGTCTTGTCCTCACCTTAGTGGCATTGCTGCTCTTCTTAGAGGTTCTCACCCGGACTGGTCGCCAGCCGCCATAAAATCAGCAATGATGACTACAGCC CACCTGACTCAAAAGGACAGCAGCAGCAGTAGTAACAAACCCATCTCCGACGAACAACGACTCCCGGCCGACTTATTCGACATGGGATCAGGCCACGTGA ATCCGATCGGAGCCAACGACCCCGGACTAGTCTACGACATCCAGCCAGACGATTACATTCCTTACCTATGCGGCTTGGGGTACAGCGACGCGCAGGTGAC CACAATCGTGCAGCGGAAGGTGCAATGCTCGTCGAACCAATCGATACCAGAAGCTCAGCTGAATTACCCGTCGTTCGTTTTGCAATTGGAGCCTGGGGAG CCACAGACGTACACTAGGACTGTGACGAACGTTGGTAAGGCGAACTCAGTGTACAAAGTTGAGGTGCAAGCTGCATCAGATGGCGTAGTAGATGTGGAAG TGAGTCCCCGGGAGATTGCTTTCGGTCGACTGAACGAAAAGGCGAAGTATTCGGTCACGTTCTCGTTGCGAAATGGGTCGACGAGGGGTGAGAAGTTTGT TCAAGGGAGCTTGATCTGGGTGGCGGATGGATACAGTGTGAGGAGTCCATATGGTATCATATTGAAGTGA
AA sequence Show only first row Show all	>Lus10006693 pacid=23152229 polypeptide=Lus10006693 locus=Lus10006693.g ID=Lus10006693.BGIv1.0 annot-version=v1.0 MVHSYHHVATGFAARLTRAELESMEGKRGFLSARPEKVLNLQTTYTPKFLGLQRNSGLWNGSGYGKGVVVGVFDTGVTAEHPSFSDEGMPPPPAKWRGRC EPKEVCNNKVIGARNLAAKGDSVEDEEGHGTHTASTAAGSAVSGANAMGQGFGTAVGMAPMAHLAIYKVCGGQKGCTDTAIMAAFDAAVEDGVDVLSISL GGDSAPFFNDGIAIGAFGAMKNGIFVSCSAGNEGPAASSLSNEAPWMLTVGASTVDRQIKSTVLLGNGKGFDGQTLFQPKDSASSKMLPLVYAGGASSNH NSSAVYCAPGSLSEVDVKGKVVVCESGGKIKRIDKGVEVKNNGGFGMVMINSKAAGFTTLADAHQIPASHVSYEAGVSIKEYIKSTGSPTATIVFKGTVF GDQVEAPQVASFSSRGPSKASPGIMKPDLIGPGVSTLAAWPTLVEEDGIVKGGTSDQPKFNMISGTSMSCPHLSGIAALLRGSHPDWSPAAIKSAMMTTA HLTQKDSSSSSNKPISDEQRLPADLFDMGSGHVNPIGANDPGLVYDIQPDDYIPYLCGLGYSDAQVTTIVQRKVQCSSNQSIPEAQLNYPSFVLQLEPGE PQTYTRTVTNVGKANSVYKVEVQAASDGVVDVEVSPREIAFGRLNEKAKYSVTFSLRNGSTRGEKFVQGSLIWVADGYSVRSPYGIILK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	0	1
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	1.0	1.0000
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	1.4	1.0000
					Lus10028652 [exp]	3.0	0.8684
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	3.0	0.9918
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002611 [exp]	3.2	0.8658
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	3.5	0.9472
AT5G03620			Subtilisin-like serine endopep...		Lus10003254 [exp]	3.7	0.9377
					Lus10011218 [exp]	3.9	0.9854
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	4.0	0.9888
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030458 [exp]	4.7	0.8489

Compare expression of checked genes

Lus10006693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.