Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13990 599 / 0 Exostosin family protein (.1) AT2G20370 484 / 2e-165 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G29040 485 / 1e-164 Exostosin family protein (.1) AT2G32750 462 / 1e-158 Exostosin family protein (.1) AT2G32740 442 / 4e-151 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT2G31990 427 / 4e-145 Exostosin family protein (.1) AT5G62220 330 / 8e-107 ATGT18 glycosyltransferase 18 (.1) AT5G41250 331 / 1e-106 Exostosin family protein (.1) AT1G63450 319 / 5e-101 RHS8 root hair specific 8 (.1) AT1G68470 306 / 1e-98 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007037 [exp] 798 / 0 AT4G13990 540 / 0.0 Exostosin family protein (.1) Lus10001578 [exp] 515 / 5e-178 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 514 / 2e-177 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10016532 [exp] 507 / 7e-176 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10001028 [exp] 486 / 1e-167 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10024961 [exp] 486 / 2e-166 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10022862 [exp] 486 / 2e-166 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10007426 [exp] 478 / 1e-164 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10010677 [exp] 475 / 1e-163 AT2G32750 497 / 7e-173 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G321000 [exp] 681 / 0 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.009G032500 [exp] 530 / 0 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 527 / 0 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 491 / 1e-168 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.012G130700 [exp] 311 / 6e-100 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.001G381900 [exp] 308 / 1e-98 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.001G382200 [exp] 306 / 6e-98 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 306 / 6e-97 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.015G132600 [exp] 304 / 9e-97 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G120800 [exp] 286 / 6e-91 AT4G22580 593 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10006694 pacid=23152211 polypeptide=Lus10006694 locus=Lus10006694.g ID=Lus10006694.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAACCCTCGTTCTTCCCTTCCAAATTCTGCAACTTTCAGCTTTGGTTAGTGTGTCTCTCCTCCTTTCTCCTGTGTCTCCTCTTGTTCTGCT TTGATTACTCGGCTTTACTCGGTTTCGGAAATGGCGGCTTATTAGATGAAAACTCGATGAATCCTTCTGTGGCTGAGAATCTCACTGATTCCATCACCAC ACTCGTGTATTTGAACAATCATGATCTCACCGACTCTTGTTTGGGGAAATACGTATACATTCAGGATCTTCCAGTCCGATTCAACCAAGAATTGCTTGAC CATTGTGAATCGATCACTCCAGGGAGTGAACGGAACATGTGTCCTTACTTGCTTAATCACGGATTCGGTCAGTCTATTCAAGATTCGTCTAAGATCCTGT CCAACACTAGTTGGTACTTAACAAATCAGTTCATGTTGGAGGTGATTTTCCACAGCAGGATGAAGAACTATAAGTGCTTAACCAACGATTCCTCACTTGC TTCCGCTGTTTACGTCCCGTTTTACGCCGGTCTCGATATCAGCAGGTATCTATGGGGGTTTGGAGCTTCCGCGAGAGACCGATCCGGGTTCGAGCTCATG AAATTGCTTAGTGATAAACCCGAGTGGAGGAGGATGTACGGCAGGGATCATTTCATGGTGGCCGGAAGGATTTCGTGGGATTTCAGGAGGCGAACAGATA ACGATTCGGACTGGGGGAGCAAGCTAAGGTTCATGCCGGAATCGAAAAACATGTCGATGTTGGCAATCGAGTCAAGTTCATGGAACAATGACTATGCAAT CCCGTACCCGACATGTTTCCATCCTTCGAATCAAAAGGATGTCTCAGAATGGCAGGAACAGTTAAGAAGGAAGGAAAGGCAATACTTGTTCTCTTTCGCC GGAGCTCCAAGGCCCGACCTTGACAATTCGATTCGCGGCAGGATTATGGAGGAATGCCAAGCTTCGAAAAACTCGTGCAAGTTGCTGGAATGTACTTATG CGGAAAAGGGCGCCATTACTTGTGACAATCCCGTGAATGTGATGAAGGTGTTCCAGGATTCGGTTTTTTGTTTGCAGCCGGCTGGGGATTCGTACACTAG GCGATCGACTTTCGATGCGATCCTTGCAGGGTGCATTCCGGTGTTCTTTCACCCGGGAACGGCCTACGCACAGTACAAGTGGCATTTGCCCAAGGATTAT GGAAGATACTCGGTGTTCCTTCCTGTGAAGGACGTTAAAGATTGGAAAGCTGGTGTAAACCAGACACTGCTTGGAATACCCGAGGATCGAGTGTCGGCCA TGAGGGAGGAGGTGATAGGGTTGATTCCTGGGGTGATATATGCAGATTCCGGTAATGATTTCGAAGACGCGTTTGATTTAGCGGTGAAGGGAATCCTGGA AAGGATTGAGAGAGTTAGGAAGGAGATTAGTGAAGGGAAGGATCCTGCCATTGGTTTTGCAGAAGGAGATGACTATAAGTACACATTCCCATTCAATCCC GTCAGCGGAGAGTCCACAAAGCTTCTAGCATTGATCTCTCACTTGCCTTTCCACCTTGCAGGTGAGGTGGCATGGTATGCCTTGGTCGCGAACCGAAAGG TGATCATGCTTCATGCCGGTACCAATGACTCTGATGATCACTCCTTTGCCAAGATTGGATGA
AA sequence Show only first row Show all	>Lus10006694 pacid=23152211 polypeptide=Lus10006694 locus=Lus10006694.g ID=Lus10006694.BGIv1.0 annot-version=v1.0 MGKKPSFFPSKFCNFQLWLVCLSSFLLCLLLFCFDYSALLGFGNGGLLDENSMNPSVAENLTDSITTLVYLNNHDLTDSCLGKYVYIQDLPVRFNQELLD HCESITPGSERNMCPYLLNHGFGQSIQDSSKILSNTSWYLTNQFMLEVIFHSRMKNYKCLTNDSSLASAVYVPFYAGLDISRYLWGFGASARDRSGFELM KLLSDKPEWRRMYGRDHFMVAGRISWDFRRRTDNDSDWGSKLRFMPESKNMSMLAIESSSWNNDYAIPYPTCFHPSNQKDVSEWQEQLRRKERQYLFSFA GAPRPDLDNSIRGRIMEECQASKNSCKLLECTYAEKGAITCDNPVNVMKVFQDSVFCLQPAGDSYTRRSTFDAILAGCIPVFFHPGTAYAQYKWHLPKDY GRYSVFLPVKDVKDWKAGVNQTLLGIPEDRVSAMREEVIGLIPGVIYADSGNDFEDAFDLAVKGILERIERVRKEISEGKDPAIGFAEGDDYKYTFPFNP VSGESTKLLALISHLPFHLAGEVAWYALVANRKVIMLHAGTNDSDDHSFAKIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13990			Exostosin family protein (.1)		Lus10006694 [exp]	0	1
AT1G27190			Leucine-rich repeat protein ki...		Lus10030811 [exp]	6.0	0.8434
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	11.4	0.8515
AT1G27190			Leucine-rich repeat protein ki...		Lus10013288 [exp]	11.7	0.8277
AT4G01200			Calcium-dependent lipid-bindin...		Lus10002155 [exp]	15.2	0.8219
AT5G09800			ARM repeat superfamily protein...		Lus10006791 [exp]	16.5	0.8328
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	19.0	0.8327
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031819 [exp]	24.8	0.8251
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	28.9	0.8302
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10019477 [exp]	31.5	0.8238
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	31.6	0.8248

Compare expression of checked genes

Lus10006694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.