Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 79 / 1e-15 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G06240 72 / 2e-13 F-box family protein (.1) AT1G19160 63 / 1e-10 F-box family protein (.1) AT3G23880 62 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT4G22390 62 / 3e-10 F-box associated ubiquitination effector family protein (.1) AT4G09190 61 / 5e-10 F-box and associated interaction domains-containing protein (.1) AT3G21120 58 / 6e-09 F-box and associated interaction domains-containing protein (.1) AT5G50220 57 / 1e-08 F-box family protein (.1) AT1G32420 56 / 2e-08 F-box and associated interaction domains-containing protein (.1) AT4G21240 54 / 1e-07 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007040 [exp] 417 / 2e-144 AT3G06240 86 / 4e-18 F-box family protein (.1) Lus10011015 [exp] 332 / 9e-111 AT3G06240 94 / 7e-21 F-box family protein (.1) Lus10024389 [exp] 262 / 2e-84 AT4G12560 62 / 1e-10 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10006687 [exp] 259 / 5e-84 AT4G12560 81 / 5e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10032343 [exp] 117 / 2e-29 AT1G07700 218 / 9e-71 Thioredoxin superfamily protein (.1.2.3) Lus10038541 [exp] 95 / 3e-23 AT3G52320 45 / 2e-06 F-box and associated interaction domains-containing protein (.1) Lus10014136 [exp] 89 / 1e-20 AT3G06240 45 / 2e-10 F-box family protein (.1) Lus10008871 [exp] 79 / 1e-15 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10023238 [exp] 76 / 6e-15 AT3G23880 126 / 6e-33 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G318400 [exp] 94 / 8e-21 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.015G013800 [exp] 88 / 6e-19 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 88 / 7e-19 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.010G207500 [exp] 83 / 3e-17 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014300 [exp] 79 / 1e-15 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.011G121200 [exp] 77 / 2e-15 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006900 [exp] 74 / 3e-14 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058000 [exp] 74 / 3e-14 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.008G006800 [exp] 72 / 9e-14 AT4G12560 100 / 4e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013200 [exp] 72 / 1e-13 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10006697 pacid=23152227 polypeptide=Lus10006697 locus=Lus10006697.g ID=Lus10006697.BGIv1.0 annot-version=v1.0 ATGAACACAAAAAGCAACCATCGCCGCCAGCCACCGCATCACCGCAATTCAACCGTAATGAAGAAGCCATCATTCATCATCAAACTCATATCCTGCCTAA AGAAGGAAACAAGAAGAAGGTCGGCTTCTACAGGCAACGACAGATCGTCTCCCTTACCGGAGGACATTGTCGTTGACATCTTGGCCAAACTTCCAGACAA GACTCTGCTACGATTCAAGTGTTTGTCCACCGGCATTCGCAATCTCATTCAATCCTCGCATTTCGTGGCTGCACGCGCCGATCATCGACGCAAAAACGGT ACTAACGGCATCTTCCTCCTTGCTCATAGAGACGTGGTTTCCACGCGTATCAATGATAGTAGTACTAGCAGTAGGGGAGTTTATTCCTTCTCCTTGCCAT TTCTGAAGAACCCTAATTTGGAACATCTGGAATACGTGGGATCATGGAACGGTTTAGTCTGTTTGAACATATTCGAAGATGCGAATCGAAGTAGTTTAAT AAATATGGTTCTTTGGAATCCAGTCACCTCCGAGTTCGGCTTTGCTCCTCCTTTTCTTCCTTCTATGATTCACTCTCATGGCAAAGTGTTTTACGGATTT GGATACGATCCTGTGTCCGATGATTACAAGTCGATCAGGCTATCCGTGTGCGGAATGATGGGTGTGTTAGTACAAGTGCTGAGCTGGGGGAAGAGGAGCT GGGCAAAGCTCGAGGTCGAACCAAAGATTGGCTGCTTAGACTCACGGATCTTTGGAATCCTACCCGATGGTACTCTGACGAGCAAAGGGAGAGTGAATTG GATGCTTGATGATGGAAGATATACTTCGGGTTTGTTGCTTTCGTTCAAACTCGGCGAAGAGAAATTCGAATGGATATATCCTCCGCGGAAAGTCTGGGAT GATGATTGTTGTACAAAAGCATGTGTTTGGAAAGGATTACTTGCCATGCTCGTCGAGGGAAGCTCGGGCACTACTCATTCTCTTTGGTTGTTCAATGATG TTGTTGATGATGATGATCGAGATCGTTCATGTCGTTGGTCTAAACGGTTTATCATCCAAACGAATTATCCTTGCGAGTGGGTGAGCGAACCGGAGGACAT CTGGAGGAACGACAAGAAATGGAATTCGTTCTTGGTGTATCAATTCGATGATCGTCTTGCGTTAGCTTCCATGGTAGGGAAGCTCAGGTCTCGATTTGGT TATCATATCCAAAGAGGTTTCGAGTTTACGGAGACATTGGTTCCGATCCCTGGCTCGAGCTTGGTAGGGTAG
AA sequence Show only first row Show all	>Lus10006697 pacid=23152227 polypeptide=Lus10006697 locus=Lus10006697.g ID=Lus10006697.BGIv1.0 annot-version=v1.0 MNTKSNHRRQPPHHRNSTVMKKPSFIIKLISCLKKETRRRSASTGNDRSSPLPEDIVVDILAKLPDKTLLRFKCLSTGIRNLIQSSHFVAARADHRRKNG TNGIFLLAHRDVVSTRINDSSTSSRGVYSFSLPFLKNPNLEHLEYVGSWNGLVCLNIFEDANRSSLINMVLWNPVTSEFGFAPPFLPSMIHSHGKVFYGF GYDPVSDDYKSIRLSVCGMMGVLVQVLSWGKRSWAKLEVEPKIGCLDSRIFGILPDGTLTSKGRVNWMLDDGRYTSGLLLSFKLGEEKFEWIYPPRKVWD DDCCTKACVWKGLLAMLVEGSSGTTHSLWLFNDVVDDDDRDRSCRWSKRFIIQTNYPCEWVSEPEDIWRNDKKWNSFLVYQFDDRLALASMVGKLRSRFG YHIQRGFEFTETLVPIPGSSLVG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10006697 [exp]	0	1
					Lus10038003 [exp]	2.4	0.8695
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Lus10036588 [exp]	3.5	0.8069
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	4.2	0.8836
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	6.0	0.8836
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	7.3	0.8836
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020333 [exp]	7.9	0.8584
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	8.5	0.8807
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	9.5	0.8789
AT5G36930			Disease resistance protein (TI...		Lus10005827 [exp]	11.0	0.7505
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	12.7	0.8487

Compare expression of checked genes

Lus10006697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.