Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 140 / 2e-38 ARA12 Subtilase family protein (.1) AT1G04110 136 / 5e-37 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G05920 132 / 1e-35 Subtilase family protein (.1) AT3G14240 127 / 8e-34 Subtilase family protein (.1) AT5G59090 123 / 3e-32 ATSBT4.12 subtilase 4.12 (.1.2.3) AT4G34980 120 / 3e-31 SLP2 subtilisin-like serine protease 2 (.1) AT5G59120 119 / 4e-31 ATSBT4.13 subtilase 4.13 (.1) AT4G26330 119 / 4e-31 ATSBT3.18, UNE17 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) AT5G58830 119 / 5e-31 Subtilisin-like serine endopeptidase family protein (.1) AT3G14067 119 / 7e-31 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028895 [exp] 209 / 2e-63 AT5G67360 566 / 0.0 Subtilase family protein (.1) Lus10008919 [exp] 208 / 6e-63 AT5G67360 561 / 0.0 Subtilase family protein (.1) Lus10007044 [exp] 199 / 1e-59 AT1G04110 590 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10007045 [exp] 190 / 3e-56 AT1G04110 603 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006689 [exp] 189 / 5e-56 AT2G05920 563 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 187 / 3e-55 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 186 / 5e-55 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10006693 [exp] 184 / 3e-54 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 186 / 4e-54 AT5G67360 567 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118500 [exp] 233 / 3e-72 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 230 / 2e-71 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 224 / 6e-69 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 211 / 3e-64 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 197 / 9e-59 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G450600 [exp] 136 / 5e-37 AT1G32960 772 / 0.0 Subtilase family protein (.1) Potri.002G256300 [exp] 129 / 2e-34 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.011G150900 [exp] 127 / 5e-34 AT1G32960 744 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 127 / 8e-34 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.012G131500 [exp] 127 / 9e-34 AT5G51750 1102 / 0.0 subtilase 1.3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10006700 pacid=23152198 polypeptide=Lus10006700 locus=Lus10006700.g ID=Lus10006700.BGIv1.0 annot-version=v1.0 ATGGCTACATTAACCTTCAAAGGAATTGTCTTTGGTTTGTCGTATTCGCCCCAAGTTGCTGTCTTTTCCTCAAGAGGTCCTAGCTCGGCGAGCCCTGGCA TCTTGAAACCTGATATCTTAGGCCCTGGAGTTCAAATTATAGCAGCTTGGCCAAAAGCAGTGGATAACTACAAGAATAACACAAATTCAGCCTTTAATGT AATCTCAGGAACCTCAATGTCATGTCCGCATCTCGCAGGAATTGCTGCATTGCTTAAAACCTCACTTCCTGATTGTGATCAACAATTTGTCGAGGCCGAT CTGTTTGCAACTGGTTCTGGACAGGTGAACCCCACAAAAGCCAACAATCCAGGTCTTGTATACGATCTGCAACCTGAAGAATACATTCCATACTTGTGTG GACTTGCTACCTCGTCGTACAAGTCTGAAATCCTTGGACTACAAGGGGTTGACATCAAGGTAACACCTGCTACAATTTCTTTCATTGAGCTGAACGAGAA GGTAAGTTTTTCAGTGACATTCAGCAGAAAGGAAAGCTTCGCTGGACCTTCAACTCAAGGCCATCTCAGGTGGTTTTCCAGTAACCACAATGTTACAAGC CCGATTGCTGTTAAGCTTGAGTTTCAGTAA
AA sequence Show only first row Show all	>Lus10006700 pacid=23152198 polypeptide=Lus10006700 locus=Lus10006700.g ID=Lus10006700.BGIv1.0 annot-version=v1.0 MATLTFKGIVFGLSYSPQVAVFSSRGPSSASPGILKPDILGPGVQIIAAWPKAVDNYKNNTNSAFNVISGTSMSCPHLAGIAALLKTSLPDCDQQFVEAD LFATGSGQVNPTKANNPGLVYDLQPEEYIPYLCGLATSSYKSEILGLQGVDIKVTPATISFIELNEKVSFSVTFSRKESFAGPSTQGHLRWFSSNHNVTS PIAVKLEFQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006700 [exp]	0	1
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10017826 [exp]	1.4	0.9365
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10033385 [exp]	1.4	0.9512
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10023160 [exp]	2.8	0.9323
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10003459 [exp]	7.1	0.8563
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10034300 [exp]	9.0	0.9358
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10030465 [exp]	10.7	0.9299
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10000932 [exp]	10.9	0.8638
					Lus10033191 [exp]	12.1	0.8605
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10009226 [exp]	14.1	0.8600
AT5G10695			unknown protein		Lus10042440 [exp]	14.5	0.8357

Compare expression of checked genes

Lus10006700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.