Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 570 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67360 539 / 0 ARA12 Subtilase family protein (.1) AT3G14240 537 / 0 Subtilase family protein (.1) AT2G05920 529 / 8e-179 Subtilase family protein (.1) AT4G34980 524 / 1e-176 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 519 / 1e-174 Subtilase family protein (.1) AT1G01900 494 / 1e-164 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 493 / 2e-164 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G51750 489 / 5e-163 ATSBT1.3 subtilase 1.3 (.1) AT5G59810 464 / 4e-153 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006704 [exp] 1474 / 0 AT1G04110 594 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10007046 [exp] 1438 / 0 AT1G04110 603 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10007045 [exp] 853 / 0 AT1G04110 603 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10002995 [exp] 801 / 0 AT1G04110 584 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10007044 [exp] 714 / 0 AT1G04110 590 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10028893 [exp] 707 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10029575 [exp] 678 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 677 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10007036 [exp] 666 / 0 AT5G67360 564 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118800 [exp] 861 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 755 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 747 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 743 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 735 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 584 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 551 / 0 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G163600 [exp] 542 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 542 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 537 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10006702 pacid=23152196 polypeptide=Lus10006702 locus=Lus10006702.g ID=Lus10006702.BGIv1.0 annot-version=v1.0 ATGACTGGGAATCTCGAGAGTGATTTGGAGACTTACATTGTTCACGTCGTCAATCAACCAGACAGCAGAAATTATGGTGGGTTAGAAGATCTAGAGGCTT GGCATCGGTCATTTTTGCCCGTCGTCAGCACATCAAAGTCGAGGGATGCTCATCGACTTCTGCTTTACTCGTACCGAGATGTAATCAGCGGGTTTTCTGC AAGACTAACAAAAGAAGAGTTGATGGTCATGGAACTCAAAGATGGATTTTTATCAGCCCATCCAGAGAAAACATTCTATCTCCAGACAACCCGTAGCCCT CACTTCCTGGGTCTGGATCTAAAAGCAGGAGTTTGGAAACAAACCAACTATGGAAGTGGGGTTATCATTGGAGTCCTGGACACCGGCGTGTCTCCCAAGC ATCCTTCATTCAACGGCAAAGAGATGTCAGCACCTCCACCGAAATGGAAAGGAAAGTGCGAGTTTAAAGCTTCACACTGCAATAACAAATTAATCGGTGC AAGGACTTTCAACCTCGGAGCTAAGGCTAAGAAAGGAGTCAAGCCTGAAACACCGATTGATCGAGATGGACATGGAACTCACACGGCAAGCACAGCAGCT GGTGCCTTTGTGAAGAATGCTAACGTGTTGGGAAATGCCAGGGGTACATCGGCAGGAATGGCACCTGGGGCCCACGTAGCGGTTTACAAGGTTTGCTCAC AAGATTGTCTTGAAAGTGATATACTAGCAGGGATGGATGCAGCAATCCATGATGGTGTCGATGTGATCTCGATTTCACTGGGAGCAGATCCTGGAATACC ACTGTATAAAGACAGTATTTCGGTAGGCGCTTTGGCAGCAACCCAGAAGGGGATACTTGTGAGCATGGCAGCTGGAAATTCTGGCCCTGGATATAGCACG TTATCTAGTGAAGCCCCGTGGCTTCTGACCGTTGGTGCAAGCACCATAGACAGAAAAGTTGTGGCTACAGCAAAGCTAGGAAATGGGAAGACATTTGATG GTGAATCGCTTTACCAACCAAGAAACTTCCACGCAACTTCGCTGCCACTTGTTTATGCTGGGAAGAACAAGAGGCCGTCGTCAGAATTATGTGGCAAAGG GTCATTGAGAGGTATGAACGTGAAAGGCAAAGTAGTCCTGTGTGAAAGAGGTGTGGTCGATAGACTTGATAAAGGCAAGGAAGTGAAACGTGCCGGTGGT GCAGCCATGATACTTGCAAATGGACCAGAGGATGGCTTCAGTACCTTAGCTGATCCCCATGTTCTCCCTGCTACACATGTCAGCTATGAAGCCGGACAGA AAATTAAAGCTTACATAAATTCAACAAAGACACCAACAGCAACCATCTTGTTCAAAGGAACTACCTTTGAAGGCACAACTGCTCCAGCTGTGACTTCCTT CTCTTCAAGAGGGCCCACGTTGGTATGCCGAGGAATTCTCAAGCCAGACATTATGGGTCCTGGAGTGAGCATACTAGCAGCATGGCCATCTCGTGGGAAG AACAAAACAAAGAGAGAACCAACCTTCAATATTGAGTCAGGCACATCGATGGCATGCCCCCATCTGAGTGGCATTGCAGCACTGCTCAAACAATCTCATC CCACTTGGTCACCTGCTGCCATCAAATCCGCTATCATGACTACAGCCGATATTATAACCAGGAGAGGCGCTTCCATCAGTGATTATGACAATCGACCTGC AGACCTCTTCGCCATTGGATCTGGCCAGGTGAACCCATCAAAGGCAAATAACCCTAGTTTGATCTATGACATCCACCCGGCAGACTACACACAATATCTC TGTGGCTTAGGCTACACAGATAAACAAGTTCGGGTTATCTCCAGGACGCCAATTAAATGCAAAGCACAGAGAAAGTTACCCGTGGAAGAGCTCAACTACC CTTCACTCTCGGTCACCTTGCATCAACGCTCCCAGTCATTCACAAGAACTGTTACCAATGTTGGCCATGCAAACACAAGCTATTATGTAAAGATCACTCC TCCAATTGGGGTCCATGTAAGCGTGAAGCCGACCAATCTGCACTTCACAAAAGTGGGCCAGAGGATAAAATACTCTGTGTCATTTAGTCTAACCAACAAA ACCAGGCCACACCGCCAGTTTGCTCAAGGGTATCTGTTGTGGGTTTCATCTGCTAAGCACAGTGTTAGAAGTCCCATCTCTGTGCAGTTCAACTGA
AA sequence Show only first row Show all	>Lus10006702 pacid=23152196 polypeptide=Lus10006702 locus=Lus10006702.g ID=Lus10006702.BGIv1.0 annot-version=v1.0 MTGNLESDLETYIVHVVNQPDSRNYGGLEDLEAWHRSFLPVVSTSKSRDAHRLLLYSYRDVISGFSARLTKEELMVMELKDGFLSAHPEKTFYLQTTRSP HFLGLDLKAGVWKQTNYGSGVIIGVLDTGVSPKHPSFNGKEMSAPPPKWKGKCEFKASHCNNKLIGARTFNLGAKAKKGVKPETPIDRDGHGTHTASTAA GAFVKNANVLGNARGTSAGMAPGAHVAVYKVCSQDCLESDILAGMDAAIHDGVDVISISLGADPGIPLYKDSISVGALAATQKGILVSMAAGNSGPGYST LSSEAPWLLTVGASTIDRKVVATAKLGNGKTFDGESLYQPRNFHATSLPLVYAGKNKRPSSELCGKGSLRGMNVKGKVVLCERGVVDRLDKGKEVKRAGG AAMILANGPEDGFSTLADPHVLPATHVSYEAGQKIKAYINSTKTPTATILFKGTTFEGTTAPAVTSFSSRGPTLVCRGILKPDIMGPGVSILAAWPSRGK NKTKREPTFNIESGTSMACPHLSGIAALLKQSHPTWSPAAIKSAIMTTADIITRRGASISDYDNRPADLFAIGSGQVNPSKANNPSLIYDIHPADYTQYL CGLGYTDKQVRVISRTPIKCKAQRKLPVEELNYPSLSVTLHQRSQSFTRTVTNVGHANTSYYVKITPPIGVHVSVKPTNLHFTKVGQRIKYSVSFSLTNK TRPHRQFAQGYLLWVSSAKHSVRSPISVQFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10006702 [exp]	0	1
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10006704 [exp]	1.0	0.9291
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030883 [exp]	8.4	0.6561
					Lus10018591 [exp]	10.2	0.6463
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10003997 [exp]	16.9	0.6459
					Lus10042175 [exp]	22.5	0.5806
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10023579 [exp]	25.8	0.6118
AT3G62710			Glycosyl hydrolase family prot...		Lus10034128 [exp]	29.4	0.5722
AT3G57500			unknown protein		Lus10012197 [exp]	43.3	0.5718
AT2G27410	B3		Domain of unknown function (DU...		Lus10000815 [exp]	43.5	0.5334
AT2G27410	B3		Domain of unknown function (DU...		Lus10038980 [exp]	47.1	0.5842

Compare expression of checked genes

Lus10006702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.