Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12530 139 / 3e-40 unknown protein AT1G56420 68 / 1e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007047 [exp] 418 / 2e-149 AT1G12530 146 / 6e-44 unknown protein Lus10031412 [exp] 66 / 1e-12 AT1G56420 204 / 2e-67 unknown protein Lus10010921 [exp] 64 / 7e-12 AT1G56420 209 / 4e-69 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118900 [exp] 212 / 6e-68 AT1G12530 158 / 4e-48 unknown protein Potri.013G009100 [exp] 70 / 3e-14 AT1G56420 206 / 8e-68 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006705 pacid=23152218 polypeptide=Lus10006705 locus=Lus10006705.g ID=Lus10006705.BGIv1.0 annot-version=v1.0 ATGCAGCAGCTACCCGACTCCGGCCGAAGCAGGGGGCTAACTAGCGACCCTGTTCAAAGGCTAAGAGATTACGAGAAAATACACAAAGGAGTTCTAATCT TCCTAGGAACAGAAAAAAATCTGAAAGAGATAATGGAAGGCGGCAGCAGCGATCAACAGCCGAAGAAGAAGAAGATGAGAGTCAGAAAAGACGACGTAAT CGCCAAGCTAAAGGACGATGGCGACTTCGACAATCTCCGCCTTAAGATCATCCGCAAGCTCAAAGACAATGAGGAATTCAGGAGCGGCATTATTTCCATG GTGAGGCAGACAGCTGCTCTGAATCGTGAAGGTGCTGCAAACATGAAGCCAAGACAACTTTCTGATGCCATTTTCGATGAGGTTGGGAATACAATGATAG CACAGATGTCAGATAGCCTGTGGGGGATAATTAAATCGGAGGAGATGAGACATGAGATCACAGAGACGGTACAGTCTGTGTATGATAAAATGGAGCACCC TGAAAAGAAGAAGGAAGCCAAATTGTGTTCTCAAGATGTGGCGGTTAATCAGAATGAATCTAATACCGTTGATGCACAGCCTTGTGCGGTAGGTGTTGAG CCGAATGAGCCACCTGGATTCTCTTTGCCGGATATTCATCAAAAAAATGGTGACAAAGTTGAGGATACACAGCCACCAAAGTCTAGCAAAAGGTCGGTAG AAGAAGAACACAGTGGACGGCCCAACCGTTCAGAGGGTGTGACGGAGGTACATGATGTTTATACGGGCATCCATCCTGGCATTTCAGCAGATGGAAAGCA GAATCAGCCATGTGATGGTAGTGATGAGGATCCTGAAGTGCCTCCTGGTTTTGGTTGA
AA sequence Show only first row Show all	>Lus10006705 pacid=23152218 polypeptide=Lus10006705 locus=Lus10006705.g ID=Lus10006705.BGIv1.0 annot-version=v1.0 MQQLPDSGRSRGLTSDPVQRLRDYEKIHKGVLIFLGTEKNLKEIMEGGSSDQQPKKKKMRVRKDDVIAKLKDDGDFDNLRLKIIRKLKDNEEFRSGIISM VRQTAALNREGAANMKPRQLSDAIFDEVGNTMIAQMSDSLWGIIKSEEMRHEITETVQSVYDKMEHPEKKKEAKLCSQDVAVNQNESNTVDAQPCAVGVE PNEPPGFSLPDIHQKNGDKVEDTQPPKSSKRSVEEEHSGRPNRSEGVTEVHDVYTGIHPGISADGKQNQPCDGSDEDPEVPPGFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12530			unknown protein		Lus10006705 [exp]	0	1
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10036540 [exp]	7.3	0.7998
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008947 [exp]	12.5	0.7686
AT1G75590			SAUR-like auxin-responsive pro...		Lus10007552 [exp]	13.9	0.7641
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	17.7	0.7946
AT5G15710			Galactose oxidase/kelch repeat...		Lus10035147 [exp]	18.0	0.7586
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10018698 [exp]	18.5	0.7797
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	18.8	0.7762
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10036545 [exp]	20.0	0.7539
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10042574 [exp]	22.1	0.7682
AT1G12530			unknown protein		Lus10007047 [exp]	34.6	0.7391

Compare expression of checked genes

Lus10006705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.