Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11970 311 / 4e-105 YTH family protein (.1.2.3) AT1G30460 125 / 4e-32 C3HZnF CPSF30, ATCPSF30 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) AT5G58190 68 / 1e-12 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT3G17330 62 / 1e-10 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT1G48110 62 / 2e-10 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT1G55500 60 / 6e-10 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT1G79270 60 / 9e-10 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT5G61020 59 / 1e-09 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT1G27960 59 / 2e-09 ECT9 evolutionarily conserved C-terminal region 9 (.1) AT3G13060 59 / 2e-09 ECT5 evolutionarily conserved C-terminal region 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007048 [exp] 509 / 0 AT4G11970 335 / 1e-113 YTH family protein (.1.2.3) Lus10023254 [exp] 132 / 4e-34 AT1G30460 688 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10027582 [exp] 76 / 6e-15 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10008853 [exp] 67 / 5e-12 AT1G30460 563 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10020269 [exp] 67 / 6e-12 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10037365 [exp] 66 / 1e-11 AT1G09810 323 / 7e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10035790 [exp] 66 / 1e-11 AT1G09810 338 / 6e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10018343 [exp] 63 / 1e-10 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10037028 [exp] 63 / 1e-10 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113500 [exp] 360 / 1e-123 AT4G11970 398 / 5e-138 YTH family protein (.1.2.3) Potri.011G089901 [exp] 138 / 2e-36 AT1G30460 613 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Potri.001G357800 [exp] 132 / 4e-34 AT1G30460 602 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Potri.018G149800 [exp] 68 / 2e-12 AT5G58190 417 / 3e-139 evolutionarily conserved C-terminal region 10 (.1.2) Potri.006G079900 [exp] 63 / 7e-11 AT5G58190 420 / 1e-140 evolutionarily conserved C-terminal region 10 (.1.2) Potri.010G152300 [exp] 62 / 3e-10 AT1G48110 572 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.004G223800 [exp] 61 / 3e-10 AT1G09810 352 / 2e-115 evolutionarily conserved C-terminal region 11 (.1) Potri.001G056100 [exp] 61 / 3e-10 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.003G222700 [exp] 61 / 3e-10 AT3G13460 520 / 4e-178 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.001G002000 [exp] 61 / 3e-10 AT3G13460 546 / 0.0 evolutionarily conserved C-terminal region 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04146 [flax] [poplar] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Lus10006706 pacid=23152201 polypeptide=Lus10006706 locus=Lus10006706.g ID=Lus10006706.BGIv1.0 annot-version=v1.0 ATGTCATCCGATACTGCAAAAGAAAATGCTTCCGTAGTTGATTCATCAGTGACTGATTGGAAACATGACGTGGATAACTCAGATGACTTAGAGAGCTCGA GCTACAAGGGTAATGGTGACGGTTATACTAGGAATGAAAATGCAAGTGATCGTATGGAAGGACATCAGTTCAAAAGAAAAAACGATAGGTTGTATAATAC AAGGTATTTCATCATTAAAAGCTTGAACCATCATAATCTCCAACTGTCAGTCGATGAAGGGATTTGGGCTACCCAGGTCATGAATGAGCCAATTCTTGAA GAAGCCTTTAATAATTCTGGTAAAGTCATTTTAATATTTAGTGTCAACATGAGCGGTTTTTTCCAAGGATATGCTCAAATGGTCTCTTCCATTGGATTGA GGCATGATCATATCTGGAGTCAGGGAAGCGGTAAAAGTGGTTCTTGGGGACGAAGTTTTAAGGTTAAATGGTTGCAACTAAATGACCTGCCTTTCCAGAG GACACTTCACCTTAAGAATCCGTTGAATGAGTACAAACCTGTTAAAATTAGCCGAGACTGTCAGGAATTGCCTGAAGATATTGGCGAAACCCTCTGTAGG TTAATTGATGGAGAGATCGATGTTGACAGCTCGCGTAAAAGTTTCCCCAGGAATGATTTTCATCTCAAAGCCACTTTTACAGAACATCCATATATACCAG GAGATGGAGAGTACAATGGACCTCAGTCCCATGTGCCATGGGTTATTCATCCATTGATGCCACATGGCGGTCCTTCTCAACCTGATTTCTGGGGACTGAC AGCAGAAAGTCCTCGTGCTAGTACTCTTACTAACGATGATTTTCTTGATATGACATACGAACAATACCTGGAAGTCCATAGTAGAAGCATCAACTTGAAT TCCTCGGTTAGTATTTTTACCAGGAAACATCTAATTAGAGCTGGATGA
AA sequence Show only first row Show all	>Lus10006706 pacid=23152201 polypeptide=Lus10006706 locus=Lus10006706.g ID=Lus10006706.BGIv1.0 annot-version=v1.0 MSSDTAKENASVVDSSVTDWKHDVDNSDDLESSSYKGNGDGYTRNENASDRMEGHQFKRKNDRLYNTRYFIIKSLNHHNLQLSVDEGIWATQVMNEPILE EAFNNSGKVILIFSVNMSGFFQGYAQMVSSIGLRHDHIWSQGSGKSGSWGRSFKVKWLQLNDLPFQRTLHLKNPLNEYKPVKISRDCQELPEDIGETLCR LIDGEIDVDSSRKSFPRNDFHLKATFTEHPYIPGDGEYNGPQSHVPWVIHPLMPHGGPSQPDFWGLTAESPRASTLTNDDFLDMTYEQYLEVHSRSINLN SSVSIFTRKHLIRAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11970			YTH family protein (.1.2.3)		Lus10006706 [exp]	0	1
AT4G11970			YTH family protein (.1.2.3)		Lus10007048 [exp]	1.0	0.9484
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10020879 [exp]	1.7	0.9424
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040049 [exp]	3.2	0.9465
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	7.7	0.9243
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026991 [exp]	8.7	0.9248
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	9.8	0.9243
AT1G17450			B-block binding subunit of TFI...		Lus10037675 [exp]	15.0	0.8913
AT1G02060			Tetratricopeptide repeat (TPR)...		Lus10017658 [exp]	15.5	0.9149
AT1G55870		ATPARN, AHG2	ARABIDOPSIS THALIANA POLY\(A\)...		Lus10031646 [exp]	15.7	0.8321
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10034945 [exp]	16.4	0.9107

Compare expression of checked genes

Lus10006706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.