Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62975 77 / 3e-17 bHLH bHLH125 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12540 75 / 1e-16 bHLH bHLH055 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25400 73 / 1e-16 bHLH bHLH118 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51780 65 / 1e-13 bHLH bHLH036 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51790 64 / 6e-13 bHLH bHLH120 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25410 64 / 7e-13 bHLH bHLH126 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007049 [exp] 224 / 2e-74 AT1G62975 138 / 3e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027394 [exp] 72 / 2e-15 AT5G51780 149 / 9e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031677 [exp] 71 / 3e-15 AT5G51780 143 / 2e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027395 [exp] 70 / 6e-15 AT5G51780 138 / 9e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031676 [exp] 65 / 6e-13 AT5G51780 119 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031675 [exp] 47 / 1e-06 AT4G25400 94 / 4e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027396 [exp] 46 / 3e-06 AT4G25400 89 / 6e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113400 [exp] 94 / 8e-24 AT4G25410 124 / 6e-35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132000 [exp] 77 / 1e-17 AT5G51790 154 / 6e-47 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134300 [exp] 77 / 2e-17 AT5G51780 143 / 1e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132100 [exp] 57 / 3e-10 AT4G25410 120 / 3e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134400 [exp] 50 / 1e-07 AT5G51790 107 / 2e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006707 pacid=23152171 polypeptide=Lus10006707 locus=Lus10006707.g ID=Lus10006707.BGIv1.0 annot-version=v1.0 ATGTCGATTTTTCTACAGGGGAAGAGGTCAGTCTCGGATCACATCCACCAAGCAGCAAATTACATCAAGCATCAAGAAGGCAAGATGGAAGAGCTGAGTT GCAAGAGAGATCAGCTTAAGAAGTCCCACATTCCCACTACCACTGCAAACTCTTCAGCACCAGCATCATCGACATCGAATTCGAGTGCTAACAACTATAA CCACGAGAGGACCAACTCTGCGGTAATAATCAACGTTACGACTTGTTTGATTGGCATTGAGGTCACCCTGGAGGTCTGCGAGTTGCCCGTGGGCGTTTCG GCAATCGTTGGAGCTTTGGCTGATGAAGGGCTCAACATCGAGAGCTGCATTTCTGCTAGAGTCAATCATAGGATGGTTCACACCATCAAGGCTGAGGTGT GTGATGGGAGAAGCATTAATGCCGCTCAGCTGCAAGATAAGCTGAGTAACTCTGTATTACTGAGGAGTGCTCCGGATAAACCTGCTGGGTCTAGTTAG
AA sequence Show only first row Show all	>Lus10006707 pacid=23152171 polypeptide=Lus10006707 locus=Lus10006707.g ID=Lus10006707.BGIv1.0 annot-version=v1.0 MSIFLQGKRSVSDHIHQAANYIKHQEGKMEELSCKRDQLKKSHIPTTTANSSAPASSTSNSSANNYNHERTNSAVIINVTTCLIGIEVTLEVCELPVGVS AIVGALADEGLNIESCISARVNHRMVHTIKAEVCDGRSINAAQLQDKLSNSVLLRSAPDKPAGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62975	bHLH	bHLH125	basic helix-loop-helix (bHLH) ...		Lus10006707 [exp]	0	1
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029033 [exp]	5.1	0.8630
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10016582 [exp]	7.3	0.7858
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10026569 [exp]	9.2	0.7726
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004285 [exp]	18.0	0.7315
					Lus10017936 [exp]	23.7	0.7371
					Lus10019691 [exp]	25.8	0.7814
AT1G67090		RBCS1A	ribulose bisphosphate carboxyl...		Lus10034357 [exp]	29.0	0.7264
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10041190 [exp]	29.4	0.7855
AT5G46490			Disease resistance protein (TI...		Lus10042465 [exp]	48.6	0.7333
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Lus10016120 [exp]	71.4	0.7040

Compare expression of checked genes

Lus10006707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.